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Biology subjects

Wise, B. M.

Publications and source records attributed to Wise, B. M..

2 recordsLinked to original sources

Long-range coupling regulates stator dynamics in the bacterial flagellar motor

The bacterial flagellar motor generates torque through MotAB stator complexes which couple ion flux to rotation. Stators anchor in the peptidoglycan cell wall and dynamically remodel in response to changes in external conditions such as the mechanical load, yet how stator anchoring is regulated remains unknown. Here, we show that long-range allosteric interactions within the MotB periplasmic domain tune stator binding in Escherichia coli. Using coarse-grained elastic-network modeling and co-evolutionary analyses, we identified residues mechanically coupled to peptidoglycan-interacting loops of MotB. Targeted mutagenesis at these coupled sites produced distinct motility phenotypes in some mutants, exhibiting altered swimming speeds compared to wild-type and characteristic expression-dependent swimming trends, indicating mutation-specific effects on stator dynamics or torque. Single-motor measurements distinguished mutants with altered torque from those with altered stator dynamics. Molecular dynamics simulations revealed that mutations at distal positions reshape loop flexibility in ways that quantitatively correlate with swimming speeds. These results demonstrate that allosteric communication within MotB propagates across length scales to modulate the performance of the entire motor, revealing how local molecular changes can tune large-scale bacterial motion.

biophysics↗

A genome-wide overexpression screen reveals Mycobacterium smegmatis growth inhibitors encoded by mycobacteriophage Hammy

During infection, bacteriophages produce diverse gene products to overcome bacterial anti-phage defenses, to outcompete other phages, and take over cellular processes. Even in the best-studied model phages, the roles of most phage-encoded gene products are unknown, and the phage population represents a largely untapped reservoir of novel gene functions. Considering the sheer size of this population, experimental screening methods are needed to sort through the enormous collection of available sequences and identify gene products that can modulate bacterial behavior for downstream functional characterization. Here, we describe the construction of a plasmid-based overexpression library of 94 genes encoded by Hammy, a Cluster K mycobacteriophage closely related to those infecting clinically important mycobacteria. The arrayed library was systematically screened in a plate-based cytotoxicity assay, identifying a diverse set of 24 gene products (representing 25% of the Hammy genome) capable of inhibiting growth of the host bacterium Mycobacterium smegmatis. Half of these are related to growth inhibitors previously identified in related phage Waterfoul, supporting their functional conservation; the other genes represent novel additions to the list of known anti-mycobacterial growth inhibitors. This work, conducted as part of the HHMI-supported Science Education Alliance Gene-function Elucidation by a Network of Emerging Scientists (SEA-GENES) project, highlights the value of parallel, comprehensive overexpression screens in exploring genome-wide patterns of phage gene function and novel interactions between phages and their hosts.

microbiology↗