Search bioRxiv⌕ Search

Biology subjects

Windham, M. D.

Publications and source records attributed to Windham, M. D..

2 recordsLinked to original sources

Why woodiness repeatedly evolves--and disappears

Derived woodiness--the evolution of woody growth from herbaceous ancestors--has arisen hundreds of times across flowering plants, yet the environmental conditions associated with its repeated evolution remain poorly understood. Here, we analyse woodiness evolution in the mustard family (Brassicaceae; ~4,150 species) using a time-calibrated phylogeny of 2,927 species, including 374 of the 385 known woody species, together with global growth-form and climatic niche data. We infer 231 independent origins of woodiness alongside 176 reversals to herbaceousness, indicating that woodiness evolves repeatedly but remains evolutionarily unstable. Although woody species are enriched on islands, most occur on the mainland, where woodiness is consistently associated with drought and reduced frost. Correlated-evolution analyses reveal that drought is associated primarily with the persistence of woodiness, whereas reduced frost is associated with gains of woodiness and increased frost with its loss. These findings identify distinct climatic associations with the gain, persistence, and loss of woody growth forms.

evolutionary biology↗

Genome structure and molecular phylogeny of the only Eurasian Boechera species, Boechera falcata (Brassicaceae)

Boechera falcata (Turcz.) Al-Shehbaz (earlier known as Arabis turczaninowii Ledeb.) is a herbaceous perennial belonging to the East Siberian, boreal-steppe ecotype. It is the only species of the diverse genus Boechera that grows on the Eurasian continent, all others being endemic to North America and Greenland. In all likelihood, Boechera falcata or its ancestral lineage migrated from North America to Eastern Siberia across the Bering Land Bridge when it was exposed during the height of Pleistocene glaciation. Boechera is interesting in that many species in this genus are allodiploid and triploid apomicts that arose through complex hybridization of sexual species and ecotypes. To date, the genomes of only two American Boechera species, B. stricta and B. retrofracta, have been sequenced, analyzed, and published. In the present study, we sequenced, assembled to the chromosome level, and analyzed the B. falcata genome, which was highly homozygous with a size of 189.36 Mb. Molecular phylogenetic analysis of the nuclear and organelle genomes revealed a high degree of relatedness of B. falcata to North American relatives. Investigation of the structure of pachytene, mitotic, and diakinesis chromosome spreads (n = 14) using cytogenetic analysis and comparative chromosome painting (CCP) allowed us to identify all 22 genomic blocks of crucifers and found that five of the seven B. falcata chromosomes were collinear with their corresponding chromosomes in the ancestral Boechereae genome, and two chromosomes had undergone pericentric and paracentric inversions. Allelic analysis of the apomixis marker APOLLO gene revealed that B. falcata contains only sex alleles of this gene. The availability of the genome of the only Asian Boechera species will facilitate studies of the evolution and phylogeny of Brassicaceae species and apomixis.

genomics↗