Search bioRxiv⌕ Search

Biology subjects

Willemse, J. J.

Publications and source records attributed to Willemse, J. J..

2 recordsLinked to original sources

Enhanced extracellular matrix production provides protection to cell wall-deficient Escherichia coli

Escherichia coli-induced recurrent urinary tract infections (rUTIs) present a complicated challenge within the medical field. Most first-line antibiotic treatments primarily target cell-wall synthesis, which can lead to the formation of cell wall-deficient cells. To investigate how such cells can sustain, we obtained an E. coli strain capable of efficiently proliferating without its cell wall. One of the mutations lead to enhanced expression of rcsA, encoding an important regulator involved in responding to cell envelope stress. RNA sequencing demonstrated an upregulation of genes associated with the production of extracellular matrix components, and this increased extracellular matrix production was confirmed using various imaging techniques. Remarkably, a subsequent long-term evolution experiment on this strain revealed a further augmentation in extracellular matrix production, coinciding with an enhanced ability to withstand harsh conditions. These findings demonstrate how E. coli adapts to loss of its cell wall and that an increased synthesis of matrix constituents can compensate for the protective properties of the cell wall. SignificanceThe cell envelope is crucial for the protection of E. coli. During bacterial infections such as urinary tract infections, antibiotics that disrupt cell wall synthesis are commonly prescribed. However, this can stimulate the formation of wall-deficient bacteria that are still able to proliferate despite the presence of these drugs. Our findings reveal that loss of the cell wall in E. coli increases the production of extracellular matrix, a mechanism found in other unicellular organism too. This adaptation allows the bacteria to maintain their structural integrity and survive, highlighting a potential challenge in the successful treatment of bacterial infections.

microbiology↗

DRAM1 requires PI(3,5)P2 generation by PIKfyve to deliver vesicles and their cargo to endolysosomes

Endolysosomal vesicle trafficking and autophagy are crucial degradative pathways in maintenance of cellular homeostasis. The transmembrane protein DRAM1 is a potential therapeutic target that primarily localises to endolysosomal vesicles and promotes autophagy and vesicle fusion with lysosomes. However, the molecular mechanisms underlying DRAM1-mediated vesicle fusion events remain unclear. Using high-resolution confocal microscopy in the zebrafish model, we show that mCherry-Dram1 labelled vesicles interact and fuse with early endosomes marked by PI(3)P. Following these fusion events, early endosomes mature into late endosomes in a process dependent on the conversion of PI(3)P into PI(3,5)P2 by the lipid kinase PIKfyve. Chemical inhibition of PIKfyve reduces the targeting of Dram1 to acidic endolysosomal vesicles, arresting Dram1 in multivesicular bodies, early endosomes, or non-acidified vesicles halted in their fusion with early endosomes. In conclusion, Dram1-mediated vesicle fusion requires the formation of PI(3,5)P2 to deliver vesicles and their cargo to the degradative environment of the lysosome.

molecular biology↗