Biology subjects

Wilke, C.

Publications and source records attributed to Wilke, C..

6 recordsLinked to original sources

bioRxiv2024

Predictability of next elements in chimpanzee gesture sequences

Recent research has produced evidence for basic combinatorial abilities in the vocal systems of different animal species. Here, we investigate the structure of gesture sequences in Eastern chimpanzees (Pan troglodytes schweinfurthii) to detect whether gestural communication shows non-random combinations and how combinatorial rules influence predictability. Gesture, as compared to vocalization, offers greater flexibility in how signals are combined--for example overlapping in time -- and as the parsing of signals into sequences is dependent on researcher decisions, we employ a multiverse approach, considering four different definitions of what constitutes a sequence based on varying time thresholds. Our results indicate that sequences tend to be short (even with the most liberal time-window) and that transitions between some gesture types occur more frequently than expected by chance, with some transitions showing significant association across all time-windows. These transitions often involve repetition, suggesting persistence as a key aspect of chimpanzee gestural sequences. Information about previous gestures reduced uncertainty in predicting subsequent gestures. The order of gestures within sequences appears to be less critical than their cooccurrence, challenging assumptions based on the linear patterning derived from vocal communication. Our findings highlight the importance of methodological choices in sequence definition and suggest that chimpanzee gestural communication is characterised by a mix of predictability and flexibility, with implications for understanding the evolution of complex communication systems.

animal behavior and cognition↗

bioRxiv2023

Many morphs: parsing gesture signals from the noise

Parsing signals from noise is a general problem for signallers and recipients, as well as for researchers studying communicative systems. Substantial research efforts have been invested in comparing how other species encode information and meaning in their signals, and how signalling is structured. However, our ability to do so depends on identifying and discriminating signals that represent meaningful units of analysis. Early approaches to defining signal repertoires applied top- down approaches, classifying cases into predefined signal types. Recently, more labour-intensive methods have taken a bottom-up approach describing the features of each signal in detail and clustering cases into types based on patterns of similarity between them in multi-dimensional feature-space that were previously undetectable. Nevertheless, it remains essential to assess whether the resulting repertoires are composed of relevant units from the perspective of the species using them, and redefining repertoires when additional data makes more detailed analyses feasible. In this paper we provide a framework that takes data from the largest set of wild chimpanzee (Pan troglodytes) gestures currently available, splitting gesture types at a fine scale based on modifying features of gesture expression and then determining whether this splitting process increases the information content of the communication system. Our method allows different features of interest to be incorporated into the splitting process, providing substantial future flexibility across - for example - species, populations, and levels of signal granularity. In doing so we provide a powerful tool allowing researchers interested in gestural communication to establish repertoires of relevant units for subsequent analyses within and between systems of communication.

animal behavior and cognition↗

bioRxiv2023

Vocal-visual combinations in wild chimpanzees

Human communication is strikingly multi-modal, relying on vocal utterances combined with visual gestures, facial expressions and more. Recent efforts to describe multi-modal signal production in our ape relatives have shed important light on the evolutionary trajectory of this core hallmark of human language. However, whilst promising, a systematic quantification of primate signal production which filters out random combinations produced across modalities is currently lacking. Here, through recording the communicative behaviour of wild chimpanzees from the Kibale forest, Uganda we address this issue and generate the first repertoire of non-random combined vocal and visual components. Using collocation analysis, we identify more than 100 vocal-visual combinations which occur more frequently than expected by chance. We also probe how multi-modal production varies in the population, finding no differences between individuals as a function of age, sex or rank. The number of visual components exhibited alongside vocalizations was, however, associated with vocalization type and duration. We demonstrate that chimpanzees produce a vast array of combined vocal and visual components, exhibiting a hitherto underappreciated level of combinatorial complexity. We conclude that a multi-modal approach is crucial to accurately representing the communicative abilities of non-human primates.

animal behavior and cognition↗

bioRxiv2019

More than efficacy revealed by single-cell analysis of antiviral therapeutics

Development of antiviral therapeutics emphasizes minimization of the effective dose and maximization of the toxic dose, first in cell culture and later in animal models. Long-term success of an antiviral therapeutic is determined not only by its efficacy but also by the duration of time required for drug-resistance to evolve. We have developed a microfluidic device comprised of ~6000 wells, with each well containing a microstructure to capture single cells. We have used this device to characterize enterovirus inhibitors with distinct mechanisms of action. In contrast to population methods, single-cell analysis reveals that each class of inhibitor interferes with the viral infection cycle in a manner that can be distinguished by principal component analysis. Single-cell analysis of antiviral candidates reveals not only efficacy but also properties of the members of the viral population most sensitive to the drug, the stage of the lifecycle most affected by the drug, and perhaps even if the drug targets an interaction of the virus with its host.

microbiology↗

bioRxiv2018

Approach direction prior to landing explains patterns of colour learning in bees

Gaze direction is closely coupled with body movement in insects and other animals. If movement patterns interfere with the acquisition of visual information, insects can actively adjust them to seek relevant cues. Alternatively, where multiple visual cues are available, an insects movements may influence how it perceives a scene. We show that the way a foraging bumblebee approaches a floral pattern could determine what it learns about the pattern. When trained to vertical bicoloured patterns, bumblebees consistently approached from below centre in order to land in the centre of the target where the reward was located. In subsequent tests, the bees preferred the colour of the lower half of the pattern that they predominantly faced during the approach and landing sequence. A predicted change of learning outcomes occurred when the contrast line was moved up or down off-centre: learned preferences again reflected relative frontal exposure to each colour during the approach, independent of the overall ratio of colours. This mechanism may underpin learning strategies in both simple and complex visual discriminations, highlighting that morphology and action patterns determines how animals solve sensory learning tasks. The deterministic effect of movement on visual learning may have substantially influenced the evolution of floral signals, particularly where plants depend on fine-scaled movements of pollinators on flowers.

animal behavior and cognition↗

bioRxiv2018

Natural Secretory Immunoglobulins Enhance Norovirus Infection

Secretory immunoglobulins (SIg) are a first line of mucosal defense by the host. They are secreted into the gut lumen via the polymeric immunoglobulin receptor (pIgR) where they bind to antigen and are transported back across the FAE via M cells. Noroviruses are highly prevalent, enteric pathogens that cause significant morbidity, mortality and economic losses worldwide. Murine norovirus (MNV) exploits microfold (M) cells to cross the lymphoid follicle-associated epithelium (FAE) and infect the underlying population of immune cells. However, whether natural, innate SIg can protect against norovirus infection remains unknown. To investigate the role of natural SIg during murine norovirus pathogenesis, we used pIgR-deficient animals, which lack SIg in the intestinal lumen. Contrary to other enteric pathogens, acute MNV replication was significantly reduced in the gastrointestinal tract of pIgR-deficient animals compared to controls, despite increased numbers of dendritic cells, macrophages, and B cells in the Peyers patch, established MNV target cell types. Also, natural SIg did not alter MNV FAE binding or FAE crossing into the lymphoid follicle. Instead, further analysis revealed enhanced baseline levels of the antiviral molecules interferon gamma (IFN{gamma}) and inducible nitric oxide synthase (iNOS) in the small intestine of naive pIgR-deficient animals compared to controls. Removing the microbiota equalized IFN{gamma} and iNOS transcript levels as well as MNV viral loads in germ-free pIgR KO mice compared to germ-free controls. These data are consistent with a model whereby SIg sensing reduces pro-inflammatory, antiviral molecules, which facilitates intestinal homeostasis but thereby promotes MNV infection. In conclusion, these findings demonstrate that natural SIg are not protective during norovirus infection in mice and represent another example of indirect modulation of enteric virus pathogenesis by the microbiota.

microbiology↗