Biology subjects

Whitson, J.

Publications and source records attributed to Whitson, J..

4 recordsLinked to original sources

bioRxiv2026

Spatiotemporal Mapping of Phosphorylation and Oxidation in the Pig Lens

BackgroundThe developmental pattern of the crystalline lens provides a unique model to study biological aging and its effects on the posttranslational modification of long-lived proteins. The orderly differentiation of lens fiber cells leads to a spatiotemporal gradient where mature, organelle-free fiber cells are packed in the lens nucleus surrounded by con-centric rings of successively younger fiber cells in the cortex. MethodsPig lenses were separated into six layers by dissolution in a hypotonic buffer. The changes in protein abundance, oxidation, and phosphorylation that occur across the spatiotemporal gradient of the lens were assessed quantitatively by using data independent acquisition label-free proteomic analysis of these six fractions. ResultsExpected changes in protein abundance of major lens protein which reflect the maturation process of lens fiber cells across the spatiotemporal gradient were found. Significant differences were noted in phosphorylation sites on crystallins, phakinin, and actin. Significant changes in oxidation of residues on essential lens proteins, as well as several glycolytic enzymes, were found across the spatiotemporal gradient. ConclusionDissolution of the lens followed by high resolution data-independent acquisition proteomics is a powerful technique for spatial mapping of protein abundance and posttranslational modification changes in the lens. The oxidation and phosphorylation sites noted in this study may play important roles in both lens development and cataractogenesis.

Molecular Biology↗

bioRxiv2025

Limb Position Effect in Myoelectric Control: Strategies for Optimisation and Standardisation

ObjectiveMyoelectric control uses electromyography (EMG) signals for muscle-machine interfacing with applications in prostheses, augmented/virtual reality, and consumer electronics. However, factors such as changes in the limbs position during activities of daily living reduce the controllers reliability. Therefore, there is a need to develop techniques that reduce this limb position effect to increase the widespread adoption of these technologies. ApproachWe developed an open-source device to standardise myoelectric control experiments. The device has sixteen locations for automatically positioning the participants arms to perform hand gestures or grasp objects, with lights and sensors for guidance and timekeeping. We used this device to collect data from eighteen healthy participants in a five-session study under three modalities: performing five hand gestures with a static or dynamic limb and moving three objects. We recorded forearm electromyography and kinematics of the upper limb and trained a linear discriminant analysis model to assess the classifiers accuracy across different modalities and arm positions. Main resultsThe classifiers accuracy with a static limb was decreased when tested on untrained positions, confirming the limb position effect. More training positions improved accuracy, with four optimally balancing the training burden and classifier accuracy. Classifiers trained with data from dynamic movements outperformed when tested on dynamic data. Furthermore, adding kinematic data to the classifier increased accuracy yet significantly reduced learning rates. However, training with a dynamic limb improved this learning rate. SignificanceThe limb position effect can be countered by training with multiple positions and including kinematic data. Classifiers with EMG and kinematic data should be trained using a dynamic limb to achieve high accuracy with reasonable amounts of training data. Our open-source, automated device will help standardise datasets between laboratories, aiding the further development of robust and widespread myoelectric control.

bioengineering↗

bioRxiv2023

Elamipretide Improves ADP Sensitivity in Aged Mitochondria by Increasing Uptake through the Adenine Nucleotide Translocator (ANT)

Aging muscle experiences functional decline in part mediated by impaired mitochondrial ADP sensitivity. Elamipretide (ELAM) rapidly improves physiological and mitochondrial function in aging and binds directly to the mitochondrial ADP transporter ANT. We hypothesized that ELAM improves ADP sensitivity in aging leading to rescued physiological function. We measured the response to ADP stimulation in young and old muscle mitochondria with ELAM treatment, in vivo heart and muscle function, and compared protein abundance, phosphorylation, and S-glutathionylation of ADP/ATP pathway proteins. ELAM treatment increased ADP sensitivity in old muscle mitochondria by increasing uptake of ADP through the ANT and rescued muscle force and heart systolic function. Protein abundance in the ADP/ATP transport and synthesis pathway was unchanged, but ELAM treatment decreased protein s-glutathionylation incuding of ANT. Mitochondrial ADP sensitivity is rapidly modifiable. This research supports the hypothesis that ELAM improves ANT function in aging and links mitochondrial ADP sensitivity to physiological function. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=79 SRC="FIGDIR/small/525989v1_ufig1.gif" ALT="Figure 1"> View larger version (30K): org.highwire.dtl.DTLVardef@1980dc7org.highwire.dtl.DTLVardef@1b0c22eorg.highwire.dtl.DTLVardef@19c9244org.highwire.dtl.DTLVardef@46e79b_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOGraphical Abstract.C_FLOATNO ELAM Binds Directly to ANT and ATP Synthase and ELAM Treatment Improves ADP Sensitivity, Increases ATP Production, and Improves Physiological Function in Old Muscles. ADP (adenosine diphosphate), ATP (adenosine triphosphate), VDAC (voltage-dependent anion channel), ANT (Adenine nucleotide translocator), H+ (proton), ROS (reactive oxygen species), NADH (nicotinamide adenine dinucleotide), FADH2 (flavin adenine dinucleotide), O2 (oxygen), ELAM (elamipretide), -SH (free thiol), -SSG (glutathionylated protein). C_FIG

physiology↗

bioRxiv2020

Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice

Diastolic dysfunction is a prominent feature of cardiac aging in both mice and humans. We show here that 8-week treatment of old mice with the mitochondrial targeted peptide SS-31 (elamipretide) can substantially reverse this deficit. SS-31 normalized the increase in proton leak and reduced mitochondrial ROS in cardiomyocytes from old mice, accompanied by reduced protein oxidation and a shift towards a more reduced protein thiol redox state in old hearts. Improved diastolic function was concordant with increased phosphorylation of cMyBP-C Ser282 but was independent of titin isoform shift. Late-life viral expression of mitochondrial-targeted catalase (mCAT) produced similar functional benefits in old mice and SS-31 did not improve cardiac function of old mCAT mice, implicating normalizing mitochondrial oxidative stress as an overlapping mechanism. These results demonstrate that pre-existing cardiac aging phenotypes can be reversed by targeting mitochondrial dysfunction and implicate mitochondrial energetics and redox signaling as therapeutic targets for cardiac aging.

physiology↗