Biology subjects

White, A.

Publications and source records attributed to White, A..

40 records · Page 3Linked to original sources

bioRxiv2020

Critical role of WNK1 in MYC-dependent early thymocyte development

WNK1, a kinase that controls kidney salt homeostasis, also regulates adhesion and migration in CD4+ T cells. Wnk1 is highly expressed in thymocytes, and since migration is important for thymocyte maturation, we investigated a role for WNK1 in thymocyte development. We find that WNK1 is required for the transition of double negative (DN) thymocytes through the {beta}-selection checkpoint and subsequent proliferation and differentiation into double positive (DP) thymocytes. Furthermore, we show that WNK1 negatively regulates LFA1-mediated adhesion and positively regulates CXCL12-induced migration in DN thymocytes. Despite this, migration defects of WNK1-deficient thymocytes do not account for the developmental arrest. Instead, we show that in DN thymocytes WNK1 transduces pre-TCR signals via OXSR1 and STK39 kinases and the SLC12A2 ion co-transporter that are required for post-transcriptional upregulation of MYC and subsequent proliferation and differentiation into DP thymocytes. Thus, a pathway regulating ion homeostasis is a critical regulator of thymocyte development.

immunology↗

bioRxiv2019

An Integrative Network-based Analysis Reveals Gene Networks, Biological Mechanisms, and Novel Drug Targets in Alzheimer's Disease

Alzheimers disease is a highly heritable and severe neuropsychiatric condition. Genome-wide association studies have identified multiple genetic risk factors underlying susceptibility to Alzheimers disease, however their functional impact remains poorly understood. To overcome this shortcoming, we integrated genome-wide association summary statistics (71,880 cases, 338,378 controls) with tissue-specific gene co-expression networks derived from GTEx to identify functional gene co-expression networks underlying the disease. We found genetic variants associated with Alzheimers disease are enriched in gene co-expression networks involved in immune response-related biological processes. The implicated gene co-expression networks are preserved across multiple brain and peripheral tissues, highlighting the potential utility of peripheral tissues in genetic studies of Alzheimers disease. We also performed a computational drug repositioning analysis by integrating gene expression changes within Alzheimers disease modules with drug-gene signatures from the Connectivity Map, and show disease implicated networks retrieve known Alzheimers disease drugs and novel drug repurposing candidates for follow-up functional studies. Our results improve the biological interpretation of recent genetic data for Alzheimers disease and provide a list of potential anti-dementia drug repositioning candidates of which the efficacy should be investigated in functional validation studies.

genetics↗

bioRxiv2018

Industrial bees: when agricultural intensification doesn’t impact local disease prevalence

O_LIAlthough it is generally thought that the intensification of farming will result in higher disease prevalences there is little specific modelling testing this idea. We build multi-colony models to inform how apicultural intensification is predicted to impact honeybee pathogen epidemiology at the apiary scale.\nC_LIO_LICounter to the prevailing view, our models predict that intensification, captured though increased population sizes, changes in population network structure, and increased between-colony transmission, is likely to have little effect on disease prevalence within an apiary.\nC_LIO_LIThe greatest impacts of intensification are found for diseases with relatively low R0 (basic reproduction number), however, such diseases cause little overall disease prevalence and therefore the impacts of intensification are minor. Furthermore, the smallest impacts of intensification are found for diseases with high R0 values, which we argue are typical of important honeybee diseases.\nC_LIO_LIPolicy Implications: Our findings highlight a lack of support for the hypothesis that current and ongoing intensification leads to notably higher disease prevalences. More broadly, our work demonstrates the need for informative models of agricultural systems and management practices in order to understand the implications of management changes on diseases.\nC_LI

epidemiology↗

bioRxiv2018

Human POMC processing in vitro and in vivo revealed by quantitative peptidomics

Human obesity can result from the aberrant production or processing of proopiomelanocortin (POMC) in hypothalamic neurons, but it is unclear which human POMC-derived peptides are most relevant to body weight regulation. To address this question, we analysed both hypothalamic neurons derived from human pluripotent stem cells (hPSCs) and primary human hypothalamic tissue using quantitative liquid chromatography tandem mass spectroscopy (LC-MS/MS). In both in vitro- and in vivo-derived samples, we found that POMC was processed into {beta}-melanocyte stimulating hormone ({beta}-MSH), whose existence in the human brain has been controversial. {beta}-MSH and desacetyl -MSH (d--MSH) were produced at roughly equimolar concentrations and in vast excess to acetylated -MSH (5-to 200-fold), suggesting that the importance of both d--MSH and {beta}-MSH to human obesity has been underestimated. Since body weight is sensitive to changes in MSH concentration, we asked whether hPSC-derived hypothalamic neurons could provide mechanistic insights into the processing and secretion of MSH peptides. We found that cultured human hypothalamic neurons appropriately trafficked POMC and its derivatives, and robustly (P<0.0001) secreted them when depolarised. Furthermore, the adipocyte-derived hormone leptin significantly (P<0.01) promoted their production of both d--MSH and {beta}-MSH. These results establish hPSC-derived hypothalamic neurons as a model system for studying human-specific aspects of POMC processing that might be therapeutically harnessed to treat obesity.

neuroscience↗