Wheeler, T. A. | Search bioRxiv

bioRxiv2024

Building a Collaborative DNA Barcode Library for the Diptera of Churchill, Canada: A Resource for Northern Research

Churchill, Manitoba, Canada is a diverse subarctic region that has been the focus of DNA barcoding efforts and research for decades. Despite this effort, there are still taxa in this region that are underrepresented in public databases, particularly hyper diverse insect groups. We present a collaborative large-scale DNA barcode reference library for Diptera based on molecular data and expert taxonomic identification, and we explore habitat occupancy, biogeographic patterns, and molecular evolution. The reference library contains 16786 specimens sampled around Churchill from 2005 to 2011. Selected specimens were identified by morphological means, sequenced for the animal barcode marker, and sorted into 2225 Molecular Operational Taxonomic Units (using Barcode Index Numbers: BINs) representing 68 families and 1216 named species. Eighty-five species shared a BIN with another species, 143 species were split across several BINs, and 990 species were assigned to a unique BIN, including 129 BINs new to the Barcode of Life Data System. The intraspecific and nearest neighbour distances varied across families, but most species can be easily distinguished from their nearest neighbours. By combining molecular data with taxonomic expertise, the barcode library provides species-level information for 12608 specimens, supplying future researchers with detailed taxonomic information and the opportunity to perform barcode-based specimen identifications for large-scale studies through sequence matching. Comparison of the Diptera composition of Churchill to other subarctic regions reflected likely postglacial colonization northwards as well as a Beringian and circumpolar component. This study also provides an initial investigation of molecular evolution in the best-represented species and finds variability in the rate of molecular evolution, opening intriguing avenues for further investigation. This study provides a publicly available, detailed reference library for use in future research, as well as new insights into the current diversity and taxonomic composition of Diptera present among the diverse habitats of Churchill.

molecular biology↗

bioRxiv2020

T cells Mediate Progression of Load-Induced Osteoarthritis

Osteoarthritis (OA) is a degenerative disease that manifests as joint damage and synovial inflammation. To date, most studies have focused on the decrease in cartilage stiffness, chondrocyte viability, and changes in matrix-degrading enzymes. With the exception of a few inflammatory cytokines and macrophages, the immune response in OA is poorly characterized, and the crosstalk of joint damage with T and B cells in local lymph nodes is unknown. Here, using an in vivo mouse model of mechanical loading of mouse tibia, we demonstrate that CD8+ T cells and subsets of CD4+ T cells, and not B cells, increase in the local lymph nodes and contribute to the progression of load-induced OA pathology. We demonstrate that T cell response is sex- and age-dependent. Mechanical loading of T cell knock-out mice that lack {beta} T cell receptor carrying cells resulted in attenuation of both cartilage degradation and osteophyte formation in loaded joints, with a concomitant increase in {gamma}{delta}+ T cells. Restricting the migration of T cells in lymphoid tissues through the systemic treatment using Sphingosine-1-phosphate (S1P) inhibitor, decreased localization of T cells in synovium, and attenuated cartilage degradation. Our results lay the foundation of the role T cells play in the joint damage of load-induced OA and allude to the use of S1P inhibitors and T cell immunotherapies for slowing the progression of OA pathology.

immunology↗