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Biology subjects

Wen, Y. W.

Publications and source records attributed to Wen, Y. W..

2 recordsLinked to original sources

Development of Physiologically Based Liver Distribution Model that Incorporates Intracellular Lipid Partitioning and Binding to Fatty Acid Binding Protein 1 (FABP1)

Steady-state volume of distribution (Vss) can be predicted using tissue-to-plasma partition coefficients (Kp) and tissue volumes. Kp values are important components of physiologically based pharmacokinetic (PBPK) models, allowing for estimation of distribution kinetics and simulation of concentration-time profiles. Many in silico approaches have been developed to predict tissue Kp values based on physicochemical processes that govern drug distribution. However, these methods frequently over- or under-predict tissue Kp values, highlighting the need to consider additional mechanisms that can impact drug distribution kinetics. Many drugs have been shown to bind to rat and human fatty acid binding proteins (FABPs) in vitro but the impact of this binding to drug distribution has not been incorporated into Kp predictions. We hypothesized that incorporating intracellular protein binding into tissue Kp predictions will improve Kp prediction accuracy. Using liver as a model organ, four physiologically based dynamic liver distribution models (LDMs) were developed to assess the role of distribution processes in Kp predictions. The developed LDMs incorporated known distribution mechanisms and intracellular drug binding to liver FABP (FABP1). The liver Kp values for drugs that bind to FABP1 were accurately predicted using the LDM that incorporates lipid partitioning, albumin distribution, and FABP1 binding but not using LDMs without FABP1 binding. Human FABP1 expression was quantified in 61 human livers and the interindividual variability in tissue FABP1 binding was incorporated into tissue Kp predictions. These simulations showed that intracellular FABP1 binding can cause interindividual variability in Kp values and result in concentration dependent tissue distribution. Significance StatementThis study shows that incorporating intracellular protein binding such as binding to FABP1 into tissue Kp predictions improves accuracy of the predictions. The novel dynamic LDM can be extrapolated to other organs of interest and integrated into full-body PBPK models to predict drug distribution kinetics. With dynamic and saturable distribution mechanisms incorporated into a PBPK model, nonlinear distribution kinetics can be simulated for various drugs.

pharmacology and toxicology↗

Proteomic Profiling of Human Omental and Subcutaneous Adipose Tissue in Individuals with a Broad Range of BMI.

Obesity is a major public health challenge affecting an ever-increasing proportion of the global population. It is associated with numerous comorbidities. Progressive expansion and remodeling of adipose tissue may lead to depot specific changes in adipose tissue biology and energy partitioning. Such changes likely precede the development of obesity-related complications. To facilitate a deeper understanding of adipose tissue biology, a comprehensive and quantitative proteomic dataset at the peptide and protein level is presented. Data-independent acquisition LC-MS/MS data were acquired from matched subcutaneous and omental adipose tissues from metabolically healthy individuals with no comorbidities and covering a wide range of body mass indexes. Adipose tissue samples were collected during elective surgeries and immediately processed for histology or frozen until proteomic analysis. Internal and external quality control systems ensured high quality data. All data presented are available via ProteomeXchange. This dataset will allow new insights into biological changes that evolve with increasing adiposity captured before the onset of comorbidities. Matched sampling across fat depots provides an opportunity to uncover depot-specific physiological signatures.

systems biology↗