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Weiler, C.

Publications and source records attributed to Weiler, C..

4 recordsLinked to original sources

Adenosine impairs T cell function via activation of purine salvage pathway and AMP-induced inhibition of pyrimidine nucleotide biosynthesis

Extracellular adenosine (ADO) is a well-established immune checkpoint mediator suppressing T cells via activation of A2A receptors, yet intracellular mechanisms of ADO action remain less understood. Here, we show that activated human T cells transport extracellular ADO through equilibrative nucleoside transporter 1 (ENT1) and metabolize it through ATP salvage pathway. The generated ADO metabolite AMP inhibits UMP synthase (UMPS), the rate-limiting enzyme of de novo pyrimidine biosynthesis, leading to diminished ATP production via conventional bioenergetic pathways, increased apoptosis, and impaired effector functions of T cells. Flow cytometric and single-cell transcriptomic analyses further revealed that ADO restrains the exit of naive T cells from quiescence. All effects of ADO were phenocopied by treating T cells with the inhibitors of UMPS and reversed after pharmacological blockage of ENT1 or uridine supplementation. Additional molecular docking, molecular dynamics simulations, and free-energy analyses indicate that AMP can occupy the orotidine 5'-monophosphate (OMP) decarboxylase catalytic site of UMPS with the same anchoring contacts as substrate OMP and product UMP, providing a structural rationale for direct AMP-mediated inhibition of pyrimidine biosynthesis. These findings demonstrate that immunosuppressive effects of ADO extend beyond canonical adenosinergic signaling and involve cellular ADO uptake and modulation of purine and pyrimidine metabolism.

immunology↗

Emergence and host range expansion of an epidemic lineage of Ralstonia solanacearum

The evolutionary processes underlying disease outbreaks remain unknown for most bacterial plant pathogens. We sequenced an outbreak of lethal wilt disease in Martinique caused by two distantly related lineages in the Ralstonia solanacearum species complex. One lineage (R. solanacearum IIB-4NPB) exhibited the broadest host range ever documented for a single lineage in the field, while the other (R. pseudosolanacearum I-18) expanded in parallel but retained specialisation on solanaceaous hosts. Phylogenomic analysis of 407 outbreak isolates shows both lineages independently disseminated from mainland populations into Martinique. We resolved fine-scale geographic patterns of genomic diversity and identified spatial hotspots of interspecies mobile element exchange, resulting in the identification of a new family of Ralstonia integrative conjugative elements (ICEs) associated with the outbreak. ICE accessory gene integration sites display striking functional specialization and differentiation despite variable gene content: each site acquires only metabolism-associated or defence-related genes, respectively. This work provides insight into the origin and genomic changes associated with an outbreak of plant disease, and highlights the role of mobile elements in driving pathogen emergence.

microbiology↗

A fluorescent probe enables the discovery of improved antagonists targeting the intracellular allosteric site of the chemokine receptor CCR7

Intracellularly acting ligands of G protein-coupled receptors (GPCRs) are gaining significant interest in GPCR drug discovery. In this study, we report the development of the fluorescent ligand Mz437 (4) targeting the CC chemokine receptor CCR7 at an intracellular allosteric site. We demonstrate its experimental power by applying 4 to identify two improved intracellular CCR7 antagonists, SLW131 (10) and SLW132 (21m), developed by converting two weakly active antagonists into single- or double-digit nanomolar ligands with minimal modifications. The thiadiazoledioxide 10 was derived from the CCR7 antagonist Cmp2105 by removing a methyl group from the benzamide moiety, while the squaramide 21m was obtained from the CXCR1/CXCR2 antagonist and clinical candidate navarixin by replacing the ethyl substituent by a tert-butyl group to engage a lipophilic subpocket. We show that 10 and 21m qualify to probe CCR7 biology both in recombinant cells and in the endogenous signaling environment of immune cells. Our novel probes are expected to facilitate the design of next-generation intracellular CCR7 ligands and serve as molecular tools to interrogate CCR7 biology in human and murine endogenous settings. Entry for the Table of Contents O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=109 SRC="FIGDIR/small/607356v1_ufig1.gif" ALT="Figure 1"> View larger version (59K): org.highwire.dtl.DTLVardef@1298d55org.highwire.dtl.DTLVardef@fdebf2org.highwire.dtl.DTLVardef@8d9aecorg.highwire.dtl.DTLVardef@b6308d_HPS_FORMAT_FIGEXP M_FIG C_FIG

pharmacology and toxicology↗

Comparative genomics and community curation further improve gene annotations in the nematode Pristionchus pacificus

BackgroundNematode model organisms such as Caenorhabditis elegans and Pristionchus pacificus are powerful systems for studying the evolution of gene function at a mechanistic level. However, the identification of P. pacificus orthologs of candidate genes known from C. elegans is complicated by the discrepancy in the quality of gene annotations, a common problem in nematode and invertebrate genomics. ResultsHere, we combine comparative genomic screens for suspicious gene models with community-based curation to further improve the quality of gene annotations in P. pacificus. We extend previous curations of one-to-one orthologs to larger gene families and also orphan genes. Cross-species comparisons of protein lengths and screens for atypical domain combinations and species-specific orphan genes resulted in 4,221 candidate genes that were subject to community-based curation. Corrections for 2,851 gene models were implemented in a new version of the P. pacificus gene annotations. The new set of gene annotations contains 28,896 genes and has a single copy ortholog completeness level of 97.6%. ConclusionsOur work demonstrates the effectiveness of comparative genomic screens to identify suspicious gene models and the scalability of community-based approaches to improve the quality of thousands of gene models. Similar community-based approaches can help to improve the quality of gene annotations in other invertebrate species, including parasitic nematodes.

genomics↗