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Biology subjects

Washio, K.

Publications and source records attributed to Washio, K..

2 recordsLinked to original sources

Structure of ER chaperone complex GRP170-ATP-BiP suggests a new model for substrate engagement

Molecular chaperones are essential for maintaining protein homeostasis in all living cells1. In the endoplasmic reticulum (ER), BiP and GRP170 are the sole representatives of Hsp70 and Hsp110 family and are critical for ER function. GRP170 is a relatively large and unusual chaperone that possess both nucleotide exchange and chaperoning activity2. The molecular mechanism by which these chaperones collaborate to engage substrate protein and how GRP170 couples its dual functionalities are not currently known. Here, we report the 2.7 [A] cryo-electron microscopy structure of GRP170-ATP-BiP chaperone complex purified from HEK293 cells that reveals a C-terminal curved hook domain, suggesting a role in substrate engagement in coordination with BiP. Additionally, we uncover the structural basis for GRP170 pseudo-ATPase chaperone activity - making it, to our knowledge, the first chaperone with this type of regulation. Our ER chaperone complex structure, together with prior cellular data3, suggests a new paradigm for how GRP170-BiP chaperones collaborate in ER protein quality control, broadening our understanding of how BiP/Hsp70 chaperones engage with substrates.

biochemistry↗

Designing Novel Solenoid Proteins with In Silico Evolution

Solenoid proteins are elongated tandem repeat proteins with diverse biological functions, making them attractive targets for protein design. Advances in machine learning have transformed our understanding of sequence-structure relationships, enabling new approaches for de novo protein design. Here, we present an in silico evolution platform that couples a solenoid discriminator network with AlphaFold2 as an oracle within a genetic algorithm. Starting from random sequences, we design -, {beta}-, and {beta}-solenoid backbones, generating structures that span natural and novel solenoid space. We experimentally characterise 41 solenoid designs, with -solenoids consistently folding as intended, including one structurally validated design that closely matches the design model. All {beta}-solenoids initially failed, reflecting the difficulty of designing {beta}-strand majority proteins. By introducing terminal capping elements and refining designs based on earlier experimental screens, we generate two {beta}-solenoids that have biophysical properties consistent with their designs. Our approach achieves fold-specific hallucination-based design without depending on explicit structural templates.

synthetic biology↗