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Wang, Y.-W.

Publications and source records attributed to Wang, Y.-W..

21 records · Page 2Linked to original sources

Neural Representations of Self-Generated Thought during Think-aloud fMRI

Is the brain at rest during the so-called resting-state? Ongoing experiences in the resting-state vary in unobserved and uncontrolled ways across time, individuals, and populations. However, the role of self-generated thoughts in resting-state fMRI remains largely unexplored. In this study, we collected real-time self-generated thoughts during "resting-state" fMRI scans via the think-aloud method (i.e., think-aloud fMRI), which required participants to report whatever they were currently thinking. We first investigated brain activation patterns during a think-aloud condition and found that significantly activated brain areas included all brain regions required for speech. We then calculated the relationship between divergence in thought content and brain activation during think-aloud and found that divergence in thought content was associated with many brain regions. Finally, we explored the neural representation of self-generated thoughts by performing representational similarity analysis (RSA) at three neural scales: a voxel-wise whole-brain searchlight level; a region-level whole-brain analysis using the Schaefer 400-parcels; at the systems level using the Yeo seven-networks. We found that "resting-state" self-generated thoughts were distributed across a wide range of brain regions, involving all seven Yeo networks. This study highlights the value of considering ongoing experiences during resting-state fMRI, as well as providing preliminary methodological support for think-aloud fMRI.

neuroscience↗

KIMGENS: A novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure

MotivationKinship estimation is necessary for evaluating violations of assumptions or testing certain hypotheses in many population genomic studies. However, kinship estimators are usually designed for diploid systems and cannot be used in populations with mixed haploid diploid genetic systems. The only estimators for different ploidies require datasets free of population structure, limiting their usage. ResultsWe present KIMGENS, an estimator for kinship estimation among individuals of various ploidies, that is robust to population structure. This estimator is based on the popular KING-robust estimator but uses diploid relatives of the individuals of interest as references of heterozygosity and extends its use to haploid-diploid and haploid pairs of individuals. We demonstrate that KIMGENS estimates kinship more accurately than previously developed estimators in simulated panmictic, structured and admixed populations, but has lower accuracy when the individual of interest is inbred. KIMGENS also outperforms other estimators in a honeybee dataset. Therefore, KIMGENS is a valuable addition to a population geneticists toolbox. Availability and ImplementationKIMGENS and its association simulation tool are implemented and available open-source at https://github.com/YenWenWang/HapDipKinship. ContactYen-Wen Wang Email: ywang883@wisc.edu

bioinformatics↗

Native and invasive populations of the ectomycorrhizal death cap Amanita phalloides are highly sexual but dispersal limited

The authors have withdrawn this manuscript and do not wish it to be cited. As we have moved more deeply into population genomics, we have discovered the analyses we initially used do not answer our questions well. We are recalibrating and intend to submit a new manuscript in the future. If you have any questions, please contact the corresponding author.

microbiology↗