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Biology subjects

Vogt, M.

Publications and source records attributed to Vogt, M..

18 recordsLinked to original sources

Phytoplankton performance in the lab predicts occurrence in the field across a global temperature gradient

Biologists aim to predict where species will survive and thrive as the planet warms. To do so, we often rely on data-hungry species distribution models (SDMs) that use associations between species occurrences and environmental predictors to capture the realised niche. An alternative basis for predictions is to experimentally quantify the effect of environmental drivers on performance, which captures the fundamental niche. We presently do not know which of these approaches represents a better path towards accurate forecasts. SDMs may depend too strongly on present-day environmental covariation, which will change in the future. In contrast, a major shortcoming of experiments is that they ignore most environmental drivers to focus on one or two. Quantifying how well fundamental and realised niches agree today would help establish how useful both SDMs and experiments are likely to be. We therefore compared both niches in 39 relatively common marine phytoplankton species. The temperature-dependence of population growth rate was characterised with a thermal performance curve model applied to lab experimental data, and the temperature-dependence of species occurrence probability estimated with SDMs applied to a global compilation of marine presence records. We found a fairly strong, near 1:1 relationship between measures of thermal niche centre: the median growth temperature in the lab and the median occurrence temperature in the field (R2 = 0.49). We also found a modest positive relationship between measures of thermal niche width, the growth niche width and the occurrence niche width (R2 = 0.24). This agreement should increase our confidence in environmental preferences inferred with SDMs. It also suggests that simple experiments can reliably constrain species ranges and help forecast range shifts. This has important implications for forecasting community composition and ecosystem processes, as we ought to be able to predict range shifts in biogeochemically-important taxa such as diatoms and nitrogen-fixing cyanobacteria.

ecology↗

A degradable nanofibrous scaffold of poly(ε-Caprolactone-co-Lactide) for annulus fibrosus repair

The intervertebral disc (IVD) is a key contributor to the spines biomechanical functions. It consists of a gelatinous core (nucleus pulposus, NP) surrounded by a fibrous ring (annulus fibrosus, AF). Accumulation of microcracks and tears in the AF can lead to NP herniation outside the disc space, compressing the nerve roots and causing pain. Herniation is a leading cause of low back pain and represents a major socioeconomic burden, with no effective regenerative treatment currently available. Previously, we demonstrated the potential of a poly({varepsilon}-caprolactone) (PCL)-based implant for the closure of an annulus fibrosus (AF) defect. However, the slow in vivo degradation of PCL may hinder timely AF regeneration. Here, we hypothesized that accelerating PCL degradation kinetics by incorporating a lactide component, known for its rapid degradation, could enhance AF repair. To that aim, PCLA polymers of {varepsilon}-caprolactone and lactide were synthesised as a copolymer (C-CL90%LA10%) or a blend (B-PCL80%PLA20%). These polymers were electrospun into aligned nanofibrous sheets, which were then assembled into a biomimetic multi-lamellar 3D implant. Cytocompatibility was assessed in vitro using ovine AF cells and ex vivo using a bovine tail disc model. In vitro, PCLA sheets promoted ovine AF cell alignment, proliferation, and expression of type I and II collagen. Ex vivo, the multi-lamellar implant remained in place within a full-thickness (4 mm) annular defect in bovine tail discs for 4 weeks, with initial cell infiltration. Degradation and regenerative potential were then evaluated in an ovine lumbar full-thickness annular defect model at 1 month (n=4) and 6 months (n=10) after implantation. Histological and immunohistochemical analyses revealed substantial cellular infiltration and neo-tissue ingrowth within implant layers, despite implant displacement in some cases. At 1 month, all implants retained their multi-lamellar structure with no visible degradation. By 6 months, the copolymer implants exhibited marked degradation, whereas PCL and blend implants remained structurally intact. Furthermore, ex vivo biomechanical testing revealed comparable flexibility to intact but much lower than non-implanted controls in axial rotation. This study confirms the accelerated degradation kinetics of PCLA copolymers within the disc microenvironment and demonstrates that the multi-lamellar PCLA implant can guide AF tissue repair. Further optimization is needed to enhance implant retention and ensure long-term functional integration.

bioengineering↗

Global pattern of nitrogen metabolism in marine prokaryotes

The ocean nitrogen cycle is driven by an ensemble of metabolic processes sustaining marine ecosystems and ocean productivity. However, the spatial distribution and environmental drivers of its major pathways, i.e., nitrogen fixation, denitrification, assimilatory and dissimilatory nitrate reduction to ammonium (ANRA, DNRA), and nitrification are not well known. Furthermore, the taxonomic composition of the prokaryotes supporting each pathway remain incompletely understood. Leveraging newly assembled global marine metagenomic datasets and a state-of-the-art machine learning framework, we inferred the global biogeography of the genomic potential for key metabolic pathways of the marine nitrogen cycle. This was achieved using a multi-output regression of gene read counts against environmental climatologies. Our results reveal distinct biogeographic patterns of genomic potential: anaerobic or light-inhibited pathways are enriched in high-latitude regions, eastern boundary upwelling systems, and deeper ocean layers, while nitrogen fixation and ANRA dominate in oligotrophic gyres. These patterns are consistent with known metabolic strategies, model-based estimates, and underlying taxonomy. Indeed, we identify that Cyanobacteria associate primarily with aerobic, biosynthetic pathways, while Gammaproteobacteria and Nitrososphaeria encode for nitrogen transformations related to energy requirements. By coupling microbial community composition with genome-level information, our approach advances understanding of the microbial foundations of nitrogen transformation pathways and offers new insights on underrepresented processes into biogeochemical models. We highlight the growing value of omic data to better understand marine ecosystem function in relation to environmental gradients and community composition, and their use as a potential observation-based alternative or complement to biogeochemical models.

biochemistry↗

Variations in the latitudinal diversity gradients of the ocean microbiome

Latitudinal diversity gradients (LDGs), typically declining from equator to poles, are a pervasive macroecological pattern, yet their generality and drivers in the ocean microbiome remain widely unresolved. We integrated global-scale metagenomic data with habitat modeling to study marine microbial LDGs across seasons and depths. Surface mixed layer microbiomes exhibited diversity peaks at (sub)tropical latitudes and a poleward decline, whereas mesopelagic communities (200-1,000 m) showed no latitudinal diversity structuring. Taxonomic resolution revealed that the mixed layer LDG was underpinned by Alphaproteobacteria and Cyanobacteriia, while other taxa exhibited distinct or contrasting LDGs. Diversity structuring also varied by seasons and regions, governed by temperature and nutrient availability. Together, these findings highlight that within the ocean microbiome, LDGs are not universal, but lineage-specific ecological strategies and responses to environmental gradients. Our study provides fundamental insights into the structuring of ocean microbiome diversity and lays the foundation for predicting responses to environmental change.

microbiology↗

Epigenetic remodeling via HDAC6 inhibition amplifies anti-tumoral immune responses in pediatric AML

Histone deacetylase 6 (HDAC6) has emerged as a promising therapeutic target in cancer due to its immunomodulatory effects. While its prognostic significance remains debated, we demonstrate that HDAC6 loss significantly impairs myeloid leukemia progression in vivo, despite having no functional impact on leukemia cell proliferation in vitro. Global proteome and secretome profiling of HDAC6-knockout (KO) cells revealed upregulation of several immune-related modulators, including RNase T2, a tumor suppressor known to modulate the tumor microenvironment. Notably, RNase T2 upregulation upon HDAC6 loss was restricted to myeloid but not B-ALL cells. Moreover, pharmacological inhibition of HDAC6 recapitulated this phenotype, leading to RNase T2 upregulation in myeloid leukemia cells. ATAC-seq revealed increased chromatin accessibility of RNase T2 following HDAC6 loss, highlighting a functionally epigenetic regulatory contribution. Further functional assays conducted in an immunocompetent setting both ex vivo and in vivo demonstrated that HDAC6 inhibition sensitized murine myeloid leukemia cells to broad CD8+ T cell activation as evidenced by increased TNF and CD107a expression. Consistently, in a syngeneic model, HDAC6 inhibition restricted growth myeloid leukemia cells. Moreover, an extended drug screening analysis identified Cytarabine and Clofarabine as significantly synergizing with HDAC6 inhibitor (Ricolinostat) in myeloid leukemia cell lines and in patient derived xenograft (PDX) cells, while showing limited synergy in lymphoid leukemia cell lines, PDX or healthy control cells. These findings suggest that HDAC6 represents a promising therapeutic target in myeloid lineage derived leukemia cells by simultaneously enhancing immune activation and increasing chemosensitivity.

cell biology↗

IFNα Inhibits JAK2V617F-Driven Neoplastic Vasculogenesis and Endothelial-to-Mesenchymal Transition in a 3D iPSC-Based Bone Marrow Niche Model

The vascular niche is a critical regulator of hematopoiesis and disease progression in myeloproliferative neoplasms (MPN). The presence of JAK2V617F+ endothelial cells (EC) in MPN patients and their association with cardiovascular complications highlight the need to understand and therapeutically target this compartment. Using patient-specific induced pluripotent stem cells (iPSC) harboring JAK2WT or the MPN-driver JAK2V617F (heterozygous, JAK2V617FHET, or homozygous, JAK2V617FHOM), we identified zygosity-dependent transcriptional profiles in iPSC-derived EC (iEC) at baseline and following interferon-alpha (IFN) treatment. JAK2V617FHET iEC exhibited an endothelial-to-mesenchymal transition (EndMT) signature, while JAK2V617FHOM iEC showed suppression of translation and ribosome biogenesis. Leveraging iPSC-based 3D assembloids that mimic the bone marrow (BM) niche, we showed that JAK2V617F-driven EndMT is inhibited by tyrosine kinase inhibitors and IFN. In both JAK2V617F-driven polycythemia vera and TPO-driven myelofibrosis murine models, scRNA-seq analysis of the BM vascular niche consistently revealed inflammatory and EndMT-associated signatures in arterial and arteriolar EC. Notably, dysregulation of ribosome- and translation-related pathways emerged in the myelofibrosis model and at advanced disease stages in JAK2V617F-driven polycythemia vera, indicating progressive vascular remodeling with disease evolution. Chronic pegylated IFN treatment in vivo effectively reversed these pathological changes. IFNs anti-EndMT activity was further validated in BM biopsies from MPN patients undergoing IFN therapy. This is the first study to define MPN stage-dependent vascular remodeling and zygosity-specific endothelial effects of JAK2V617F, and to directly link IFN-mediated EndMT inhibition as a novel antifibrotic mechanism. Our 3D assembloids provide a translational platform for mechanistic studies and therapeutic targeting of the BM microenvironment in MPN. Bullet PointsO_LIArterial vascular remodeling emerges as a novel hallmark of MPN, characterized by TNF-inflammation, ribosomal dysregulation and EndMT. C_LIO_LIIFN restores neoplastic endothelial dysfunction, highlighting its role as a vascular niche-modulating and anti-fibrotic agent in MPN. C_LI

cancer biology↗

Small-molecule inhibitor of C-terminal HSP90 dimerization modulates autophagy and functions synergistically with mTOR inhibition to kill cisplatin-resistant cancer cells

BackgroundA major obstacle for the successful treatment of cancer is the primary presence or development of resistance mechanisms toward therapeutic intervention. In urothelial cancer, cisplatin-based regimens are still routinely employed, and multiple cellular pathways contribute to chemoresistance. Since the identification of heat shock protein 90 (HSP90) as potential cancer target, various HSP90 inhibitors (HSP90i) have been developed and evaluated in clinical trials. However, limited efficacy has been observed, mainly caused by dose-limiting toxicity and the concomitant induction of a cytoprotective heat shock response (HSR). To avoid this effect, inhibitors targeting the C-terminal domain (CTD) of HSP90 that do not elicit an HSR have been put forward. Additionally, the crosstalk between autophagy and HSP90 is currently being explored, since both processes work together in proteostasis, and the modulation of autophagic responses might be helpful in order to improve the efficacy of HSP90 inhibitors. MethodsThe second-generation small-molecule inhibitor VWK147 targeting HSP90 CTD dimerization was synthesized and characterized in detail by biochemical cell-free and cellular assays and molecular modeling. Specifically, HSP90 inhibition, cell viability, and autophagy were monitored in mono- and combined treatments. ResultsWe demonstrate that VWK147 induces cell death in both cisplatin-sensitive and cisplatin-resistant urothelial carcinoma cells. The treatment with VWK147 in these cells led to the destabilization of classical HSP90 client proteins without triggering an HSR. Additionally, we observe that VWK147 re-sensitizes resistant urothelial carcinoma cells to cisplatin and--in combination with mTOR inhibition--synergistically kills cisplatin-sensitive and -resistant cells, in contrast to what is observed upon treatment with the N-terminal domain-targeting HSP90 inhibitor 17-AAG. This synergy may be explained by VWK147-mediated inhibition of late autophagy events, and thus a blockade of autophagic flux. Finally, we also observed that VWK147 induces non-canonical LC3 lipidation, indicating that this compound possibly exerts a broader effect on ion balance or pH of the endolysosomal system. ConclusionVWK147 is a promising inhibitor that targets the C-terminal dimerization of HSP90 and simultaneously exhibits autophagy-modulating effects. This compound could potentially be an effective option for improving anti-cancer therapies and/or overcoming treatment resistance.

cell biology↗

Standardizing marine habitat modelling practices to enhance inter-comparability across biological observations

In recent years, the volume of accessible marine pelagic observations has increased exponentially and now incorporates a wealth of new data types, including information derived from metagenomics and quantitative imaging. This calls for standardized modelling protocol across taxonomically harmonized observations, to better predict biogeographic patterns in space and time, and thus investigate marine ecosystem structure and functioning on a macroecological scale. In this context, we introduce CEPHALOPOD (Comprehensive Ensemble Pipeline for Habitat modelling Across Large-scale Ocean Pelagic Observation Datasets), a standardized and flexible framework to perform multi-species marine habitat modelling across data types and data sources. We built this new framework on observational data from federating initiatives such as AtlantECO, OBIS, GBIF, associated with already existing statistical and machine learning methods that enable to extract and model information from heterogeneous, scarce, and biased field observations. Here, we first document our statistical ensemble modelling approach and then assess its strength and limitations with a virtual ecologist approach. We show how our framework performs in reproducing a range of distributions from biased field samples. Then, we illustrate its performance and comparability across data types by investigating the global diversity patterns of coccolithophores from both abundance and metagenomic data. Our modelling framework serves as a foundation for the consistent generation of Essential Biodiversity and Ocean Variables (EBVs and EOVs) and carries the potential to significantly advance our comprehension of biodiversity and marine ecosystems functioning. Finally, it provides an unprecedented opportunity to foster collaborations in the field of marine science, sustainable ecological practices, and, ultimately, contribute to the preservation of global marine biodiversity.

ecology↗

From Brownian to deterministic motor movement in a DNA-based molecular rotor

Molecular devices that have an anisotropic, periodic potential landscape can be operated as Brownian motors. When the potential landscape is cyclically switched with a chemical reaction or an external force, such devices can harness random Brownian fluctuations to generate directed motion. Recently, directed Brownian motor-like rotatory movement was demonstrated with an electrically switched DNA origami rotor with designed, ratchet-like obstacles. Here, we demonstrate that also the intrinsic anisotropy of DNA origami rotors that originally were not designed as Brownian motor devices is sufficient to result in motor movement. We show that for low amplitudes of an external switching field such devices operate as Brownian motors, while at higher amplitudes the movement is better described by the deterministic motion of an overdamped electrical motor. We characterize the amplitude and frequency dependence of the movements in both regimes, showing that after an initial steep rise the angular speed peaks and drops for excessive driving amplitudes and frequencies. The characteristics of the rotor movement are well described by a simple stochastic model of the system.

biophysics↗

Increased LPS-Induced Fever and Sickness Behavior in Adult Male and Female Rats Perinatally Exposed to Morphine

As a result of the current opioid crisis, the rate of children born exposed to opioids has skyrocketed. Later in life, these children have an increased risk for hospitalization and infection, raising concerns about potential immunocompromise, as is common with chronic opioid use. Opioids can act directly on immune cells or indirectly via the central nervous system to decrease immune system activity, leading to increased susceptibility, morbidity, and mortality to infection. However, it is currently unknown how perinatal opioid exposure (POE) alters immune function. Using a clinically relevant and translatable model of POE, we have investigated how baseline immune function and the reaction to an immune stimulator, lipopolysaccharide, is influenced by in utero opioid exposure in adult male and female rats. We report here that POE potentiates the febrile and neuroinflammatory response to lipopolysaccharide, likely as a consequence of suppressed immune function at baseline (including reduced antibody production). This suggests that POE increases susceptibility to infection by manipulating immune system development, consistent with the clinical literature. Investigation of the mechanisms whereby POE increases susceptibility to pathogens is critical for the development of potential interventions for immunosuppressed children exposed to opioids in utero. HighlightsO_LIPerinatal exposure to morphine leads to increased fever and sickness post-LPS C_LIO_LIPerinatal exposure to morphine alters peripheral immunity C_LIO_LIPerinatal exposure to morphine increases microglial activation C_LI

neuroscience↗

Global gradients in species richness of marine plankton functional groups

The patterns of species diversity of plankton functional groups (PFGs) remain poorly understood although they matter for marine ecosystem functioning. Here, we use an ensemble of empirical species distribution models for 845 plankton species to estimate the mean annual global species richness of three phytoplankton and eleven zooplankton functional groups as a function of objectively selected environmental predictors. The species richness of all PFGs decreases from the low to the high latitudes, but the steepness and the shape of this decrease varies significantly across PFGs. Pteropods, small copepods (Oithonids and Poecilostomatoids) and Salps show the steepest latitudinal gradients, whereas Amphipods and the three phytoplankton groups show the weakest ones. While the position of such peaks and troughs in richness is modulated by the presence of upwelling systems, boundary currents and oxygen minimum zones, the gradients of temperature, irradiance, and nutrient concentration are the first-order control on the main latitudinal richness patterns. The species richness of all PFGs increases with net primary production but decreases with particles size and the efficiency of the biological carbon pump. Our study puts forward emergent Biodiversity-Ecosystem Functioning relationships and hypotheses about their underlying drivers for future field-based and modelling research.

ecology↗

Perinatal Opioid Exposure Leads to Decreased Social Play in Adolescent Male and Female Rats: Potential Role of Oxytocin Signaling in Brain Regions Associated with Social Reward

Over the last two decades, the number of infants exposed to opioids in utero has quadrupled in the United States, with some states reporting rates as high as 55 infants per 1000 births. Clinical studies report that children previously exposed to opioids during gestation show significant deficits in social behavior, including an inability to form friendships or other social relationships. To date, the neural mechanisms whereby developmental opioid exposure disrupts social behavior remain unknown. Using a novel paradigm of perinatal opioid administration, we tested the hypothesis that chronic opioid exposure during critical developmental periods would disrupt juvenile play. As oxytocin is a major regulator of sociability, the impact of perinatal morphine exposure on oxytocin peptide and receptor expression was also examined. Juvenile play was assessed in vehicle- or morphine-exposed male and female rats at P25, P35, and P45. Classical features of juvenile play were measured, including time spent engaged in social play, time not in contact, number of pins, and number of nape attacks. We report that morphine-exposed females spend less time engaged in play behavior than control males and females, with a corresponding increase in time spent alone. Morphine-exposed females also initiated fewer pins and nape attacks. Oxytocin receptor binding was reduced in morphine-exposed females in the nucleus accumbens, a brain region critical for social reward. Together, these data suggest that females exposed to morphine during critical developmental periods are less motivated to participate in social play, potentially due to alterations in oxytocin-mediated reward signaling.

neuroscience↗

Mapping global marine biodiversity under sparse data conditions

Sparse and spatiotemporally highly uneven sampling efforts pose major challenges to obtaining accurate species and biodiversity distributions. Here, we demonstrate how limited surveys can be integrated with global models to uncover hotspots and distributions of marine biodiversity. We test the skill of recent and advanced species distribution model setups to predict the global biodiversity of >560 phytoplankton species from 183,000 samples. Recent setups attain quasi-null skill, while models optimized for sparse data explain up to 91% of directly observed species richness variations. Using a refined spatial cross-validation approach to address data sparsity at multiple temporal resolutions we find that background choices are the most critical step. Predictor variables selected from broad sets of drivers and tuned for each species individually improve the models ability in identifying richness hotspots and latitude gradients. Optimal setups identify tropical hotspots, while common ones lead to polar hotspots disjunct from general marine diversity. Our results show that unless great care is taken to validate models, conservation areas in the ocean may be misplaced. Yet a game-changing advance in mapping diversity can be achieved by addressing data-sparse conditions that prevail for >80% of extant marine species. Authorship statementAll authors designed the research and contributed to the writing. D.R. designed the multiscale validation and predictor selection methods, developed the figures with input by M.V. and N.E.Z., performed research, and wrote the first draft.

ecology↗

Copepod functional traits and groups show contrasting biogeographies in the global ocean

AimThe distribution of zooplankton functional traits is a key factor for regulating food web dynamics and carbon cycling in the oceans. Yet, we lack a clear understanding of how many functional groups (FGs) exist in the zooplankton and how their traits are distributed on a global scale. Here, we model and map the environmental habitats of copepod (i.e. the main component of marine zooplankton) FGs to identify regions sharing similar functional trait expression, at the community level. TaxonMarine planktonic Neocopepoda. LocationGlobal ocean. MethodsFactor analysis on mixed data and hierarchical clustering were used to identify copepod FGs based on five species-level functional traits. An ensemble of species distribution models was used to estimate the environmental niches of the species modelled and the community weighted mean values of the traits studied. Ocean regions were defined based on their community-level mean trait expression using a principal component analysis and hierarchical clustering. ResultsEleven global copepod FGs were identified. They displayed contrasting latitudinal patterns in mean annual habitat suitability that could be explained by differences in environmental niche preferences: two FGs were associated with polar conditions, one followed the global temperature gradient, five were associated with tropical oligotrophic gyres, and the remaining three with boundary currents and counter currents. Four main regions of varying community weighted mean trait values emerged: the Southern Ocean, the northern and southern high latitudes, the tropical gyres, and the boundary currents and upwelling systems. ConclusionsThe present FGs will improve the representation of copepods in global marine ecosystem models. This study improves the understanding of the patterns and drivers of copepods trait biogeography and will serve as a basis for studying links between zooplankton biodiversity and ecosystem functioning in a context of climate change.

ecology↗

Individual-based modelling of shelled pteropods

Shelled pteropods are cosmopolitan, free-swimming organisms of biogeochemical and commercial importance. They are widely used as sentinel species for the overall response of marine ecosystems to environmental stressors associated with climate change and changes in ocean chemistry. However, currently we are unable to project the effects of climate change on shelled pteropods at the population level, due to the missing spatio-temporal characterization of the response of pteropods to environmental stressors, and the limited information on the pteropod life history and life cycle. In this study, we implement a shelled pteropod Individual-Based Model (IBM), i.e. we simulate a pteropod population as a set of discrete individuals over several generations, life stages (eggs, larvae, juveniles and adults) and as a function of temperature, food availability and aragonite saturation state. The model is able to provide an abundance signal that is consistent with the abundance signal measured in the temperate region. In addition, the modeled life stage progression matches the reported size spectrum across the year, with two major spawning periods in spring and fall, and maturation in March and September. Furthermore, our IBM correctly predicts the abundance maxima of younger, smaller and potentially more susceptible life stages in spring and winter. Thus, our model provides a tool for advancing our understanding of the response of pteropod populations to future environmental changes.

systems biology↗

Loss of TREM2 reduces hyperactivation of progranulin deficient microglia but not lysosomal pathology

GRN haploinsufficiency causes frontotemporal lobar degeneration and results in microglial hyperactivation, lysosomal dysfunction and TDP-43 deposition. To understand the contribution of microglial hyperactivation to pathology we evaluated genetic and pharmacological approaches suppressing TREM2 dependent transition of microglia from a homeostatic to a disease associated state. Trem2 deficiency in Grn KO mice led to a reduction of microglia activation. To explore antibody-mediated pharmacological modulation of TREM2-dependent microglial states, we identified antagonistic TREM2 antibodies. Treatment of macrophages from GRN-FTLD patients with these antibodies allowed a complete rescue of elevated levels of TREM2 together with increased shedding and reduction of TREM2 signaling. Furthermore, antibody-treated PGRN deficient hiMGL showed dampened microglial hyperactivation, reduced TREM2 signaling and phagocytic activity, however, lack of rescue of lysosomal dysfunction. Similarly, lysosomal dysfunction, lipid dysregulation and glucose hypometabolism of Grn KO mice were not rescued by TREM2 ablation. Furthermore, NfL, a biomarker for neurodegeneration, was elevated in the Grn/Trem2 KO. These findings suggest that microglia hyperactivation is not necessarily contributing to neurotoxicity, and instead demonstrates that TREM2 exhibits neuroprotective potential in this model.

neuroscience↗

Unequal contribution of two paralogous centromeric histones to function the cowpea centromere

The legume cowpea (Vigna unguiculata, 2n=2x=22) has significant tolerance to drought and heat stress. Here we analysed and manipulated cowpea centromere-specific histone H3 (CENH3) genes, aiming to establish a centromere-based doubled-haploid method for use in genetic improvement of this dryland crop in future. Cowpea encodes two functional CENH3 variants (CENH3.1 and CENH3.2) and two CENH3 pseudogenes. Phylogenetic analysis suggests that gene duplication of CENH3 occurred independently during the speciation of V. unguiculata and the related V. mungo without a genome duplication event. Both functional cowpea CENH3 variants are transcribed, and the corresponding proteins are intermingled in subdomains of different types of centromere sequences in a tissue-specific manner together with the outer kinetochore protein CENPC. CENH3.2 is removed from the generative cell of mature pollen, while CENH3.1 persists. Differences between both CENH3 paralogs are restricted to the N-terminus. The complete CRISPR/Cas9-based inactivation of CENH3.1 resulted in delayed vegetative growth and sterility, indicating that this variant is needed for plant development and reproduction. By contrast, CENH3.2 knockout individuals did not show obvious defects during vegetative and reproductive development, suggesting that the gene is an early stage of subfunctionalization or pseudogenization. One-sentence summaryThe two paralogous centromeric histones (CENH3) of cowpea contribute unequal to the function of the centromere.

genetics↗

Followers of honey bee waggle dancers change their behavior when dancers are sleep-restricted or perform imprecise dances

Sleep loss is known to adversely affect language use in humans (Shein, 1957; Morris, Williams, & Lubin, 1960; Horne, 1988; Wimmer, Hoffmann, Bonato, & Moffitt, 1992; Harrison & Horne, 1997; Harrison & Horne, 1998), but evidence for effects on language comprehension is sparse (Schein, 1957; Pilcher et al., 2007; Pilcher, Jennings, Phillips, & McCubbin, 2016) and we are aware of no studies explicitly examining the effects of sleep loss on communication - both signaling and receiving - in any other species. This includes studies of signals affected by sleep loss and the behavioural consequences exhibited by receivers of these signals. Possible exceptions relate to courtship (Seugnet et al., 2011) and aggression (Kayser, Mainw ...

animal behavior and cognition↗