Search bioRxiv⌕ Search

Biology subjects

Villeger, S.

Publications and source records attributed to Villeger, S..

3 recordsLinked to original sources

Coral reef ecosystem functions in a human-dominated world

The metabolic processes sustaining coral reefs, from carbonate and primary production to secondary production, remain poorly integrated and rarely quantified simultaneously at global scales. This hampers our ability to predict global responses to accelerating human pressures and manage coral reef functioning. Using metabolic scaling and bioenergetic models applied to surveys from 1,100 reefs worldwide, we provide a global, standardized quantification of 14 ecosystem functions spanning benthic (corals and algae) and fish communities. Our analysis reveals a continuous functional spectrum of global coral reefs organized along four dominant axes: 1) primary production, 2) calcification and habitat structure, 3) secondary biomass production and consumption, and 4) biomass turnover. Functions mediated by fish and benthic communities show weak associations at the global scale rather than tight coupling. Climate stressors reduced calcification and local human impacts lowered secondary production. Yet these directional effects unfolded against a backdrop of substantial natural variability in reef functional configurations, such that heavily and minimally impacted reefs overlap substantially in the global functional space. Temporal analyses across three representative reef systems further revealed that functional trajectories following disturbance are context-dependent, with no universal pattern of recovery across locations. This continuous and context-dependent functional spectrum challenges the notion of universal functional benchmarks and supports locally tailored conservation strategies.

ecology↗

FishWIO: a labeled image dataset of Western Indian Ocean reef fishes for training and testing classification algorithms

Monitoring fish communities is essential for understanding biodiversity dynamics and coral reef ecosystem health. Underwater imaging provides a non-invasive and repeatable approach for such monitoring, yet analysis of large volumes of video data remains extremely time-consuming for experts. Resolving such a bottleneck is today within reach, yet towards automated fish identification, large and high-quality, labelled image datasets are critical for training and testing reliable deep learning models. However, to date, no such dataset exists for the Western Indian Ocean (WIO), a global biodiversity hotspot hosting more than 300 common non-cryptobenthic fish species and facing increasing anthropogenic pressures. This paper presents a novel and publicly available dataset of 114,664 images annotated from 186 videos recorded using fixed underwater cameras on shallow reef habitats from Mayotte archipelago. All images were labelled and validated by trained marine biologists following a standardized protocol. Each image includes detailed metadata describing recording conditions. The dataset comprises 124 reef fish species (including 110 with >200 images) and 8 background classes. This dataset will allow training and testing automated fish classification models.

ecology↗

Strong functional divergence of tropical reef fish assemblages along the global diversity gradient

Coral reefs are experiencing declines due to climate change and local human impacts. While at local scale biodiversity loss induces shifts in community structure, previous biogeographical analyses recorded consistent taxonomic structure of fish communities across global coral reefs. This suggest that regional communities represent a random subset of the global species and traits pool, whatever their species richness. Using distributional data on 3,586 fish species and latest advances in species distribution models we show that the global distribution of reef fishes is influenced by two major traits (body size and diet) and produces a strong divergence in the trait structure of assemblages across the biodiversity gradient. This divergence is best explained by the isolation of reefs during past unfavorable climatic conditions and highlights the risk of a global community re-organization if the ongoing climate-induced reef fragmentation is not halted.

ecology↗