Search bioRxiv⌕ Search

Biology subjects

Vignale, F. A.

Publications and source records attributed to Vignale, F. A..

2 recordsLinked to original sources

The interplay between light, arsenic and H2O2 controls oxygenic photosynthesis in a Precambrian analog cyanobacterial mat.

The delayed rise of atmospheric oxygen, despite the early evolution of oxygenic photosynthesis (OP), remains a central puzzle in Earth history. Numerous ecological and geochemical constraints on OP have been proposed, but the role of environmental stressors at the physiological and ecosystem level is poorly understood. Here we show that Chl-f-harboring cyanobacteria in a high-altitude Andean microbial mat - an analog for Precambrian ecosystems - switch from OP to arsenite-driven anoxygenic photosynthesis (AP) under high light. Using microsensor profiling, mat incubations, and metatranscriptomics, we show that this shift is triggered by the accumulation of reactive oxygen species (ROS), especially hydrogen peroxide, which suppresses OP. Instead of ceasing activity, cyanobacteria reroute electron flow, using arsenite as the electron donor to sustain photosynthesis while avoiding both intracellular ROS from OP and extracellular ROS from aerobic arsenite oxidation. This switch is reversible and coordinated with diel cycles of light and arsenic speciation, sustained by a cryptic arsenic redox cycle, continuously regenerating arsenite for AP. Although the enzymatic basis remains unresolved, these findings reveal a hidden layer of metabolic plasticity in cyanobacteria and suggest that oxidative stress-responsive metabolic shifts may have supported early phototroph survival while limiting oxygen release - potentially contributing to Earths protracted oxygenation.

biochemistry↗

Yerba mate (Ilex paraguariensis) genome provides new insights into convergent evolution of caffeine biosynthesis

Yerba mate (Ilex paraguariensis) is an economically important crop marketed for the elaboration of mate, the third-most widely consumed caffeine-containing infusion worldwide. Here we report the first genome assembly of this species, which has a total length of 1.06 Gb and contains 53,390 protein-coding genes. Comparative analyses revealed that the large yerba mate genome size is partly due to a whole-genome duplication (Ip-) during the early evolutionary history of Ilex, in addition to the hexaploidization event ({gamma}) shared by core eudicots. Characterization of the genome allowed us to clone the genes encoding methyltransferase enzymes that catalyse multiple reactions required for caffeine production. To our surprise, this species has converged upon a different biochemical pathway compared to that of its relatives, coffee and tea. In order to gain insight into the structural basis for the convergent enzyme activities, we obtained a crystal structure for the terminal enzyme in the pathway that forms caffeine. The structure reveals that convergent solutions have evolved for substrate positioning because different amino acid residues facilitate a different substrate orientation such that efficient methylation occurs in the independently evolved enzymes in yerba mate and coffee. While our results show phylogenomic constraint limits the genes coopted for convergence of caffeine biosynthesis, the x-ray diffraction data suggests structural constraints are minimal for the convergent evolution of individual reactions.

plant biology↗