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Biology subjects

Vickers, S. H.

Publications and source records attributed to Vickers, S. H..

2 recordsLinked to original sources

Utilising citizen science data to rapidly assess potential wild bridging hosts and reservoirs of infection: avian influenza outbreaks in Great Britain

High pathogenicity avian influenza virus (HPAIV) is a rapidly evolving orthomyxovirus causing significant economic and environmental harm. Wild birds are a key reservoir of infection and an important source of viral incursions into poultry populations. However, we lack thorough understanding of which wild species drive incursions and whether this changes over time. We explored associations between abundances of 152 avian species and cases of HPAI in poultry premises across Great Britain between October-2021 and January-2023. Spatial generalised additive models were used, with species abundance distributions sourced from eBird modelled predictions. Associations were investigated at the species-specific level and across aggregations of species. During autumn/winter, associations were generally strongest with waterbirds such as ducks and geese; however, we also found significant associations in other groups such as non-native gamebirds, and rapid change in species-specific associations over time. Our results demonstrate the value of citizen science in rapid exploration of wild reservoirs of infection as facilitators of disease incursion into domestic hosts, especially in regions where surveillance programmes in wild birds are absent. This can be a critical step towards improving species-specific biosecurity measures and targeted surveillance; particularly for HPAIV, which has undergone sudden shifts in host-range and continues to rapidly evolve.

ecology↗

Genetic diversity, recombination and cross-species transmission of a waterbird gammacoronavirus in the wild

2.Viruses emerging from wildlife can cause outbreaks in humans and domesticated animals. Predicting the emergence of future pathogens and mitigating their impacts requires an understanding of what shapes virus diversity and dynamics in wildlife reservoirs. In order to better understand coronavirus ecology in wild species, we sampled birds within a coastal freshwater lagoon habitat across five years, focussing on a large population of mute swans (Cygnus olor) and the diverse species that they interact with. We discovered and characterised the full genome of a divergent gammacoronavirus belonging to the Goose coronavirus CB17 species. We investigated the genetic diversity and dynamics of this gammacoronavirus using untargeted metagenomic sequencing of 223 fecal samples from swans of known age and sex, and RT-PCR screening of 1632 additional bird samples. The virus circulated persistently within the bird community; virus prevalence in mute swans exhibited seasonal variations, but did not change with swan age-class or epidemiological year. One whole genome was fully characterised, and revealed that the virus originated from a recombination event involving an undescribed gammacoronavirus species. Multiple lineages of this gammacoronavirus co-circulated within our study population. Viruses from this species have recently been detected in aquatic birds from both the Anatidae and Rallidae families, implying that host species habitat sharing may be important in shaping virus host range. As the host range of the Goose coronavirus CB17 species is not limited to geese, we propose that this species name should be updated to "Waterbird gammacoronavirus 1". Non-invasive sampling of bird coronaviruses may provide a tractable model system for understanding the evolutionary and cross-species dynamics of coronaviruses.

ecology↗