Biology subjects

Vettel, J. M.

Publications and source records attributed to Vettel, J. M..

5 recordsLinked to original sources

bioRxiv2022

Within- and between-subject reproducibility and variability in multi-modal, longitudinal brain networks

Network analysis provides new and important insights into the function of complex systems such as the brain by examining structural and functional networks constructed from diffusion Magnetic Resonance Imaging (dMRI), functional MRI (fMRI) and Electro/Magnetoencephalography (E/MEG) data. Although network models can shed light on cognition and pathology, questions remain regarding the importance of these findings, due in part to the reproducibility of the core measurements and subsequent modeling strategies. In order to ensure that results are reproducible, we need a better understanding of within- and between-subject variability over long periods of time. Here, we analyze a longitudinal, 8 session, multi-modal (dMRI, and simultaneous EEG-fMRI), and multiple task imaging data set. We first investigate the reproducibility of individual brain connections and network measures and find that across all modalities, within-subject reproducibility is higher than between-subject reproducibility, reaffirming the ability to detect individual differences in network structure in both structural and functional human brain networks. We see high variability in the reproducibility of pairwise connections between brain regions, but observe that in EEG-derived networks, during both rest and task, alpha-band connectivity is consistently more reproducible than networks derived from other frequency bands. Further, reproducible connections correspond to strong connections. Structural networks show a higher reliability in network statistics than functional networks, and certain measures such as synchronizability and eigenvector centrality are consistently less reliable than other network measures across all modalities. Finally, we find that structural dMRI networks outperform functional networks in their ability to identify individuals using a fingerprinting analysis. Our results highlight that functional networks likely reflect state-dependent variability not present in structural networks, and that the analysis of either structural or functional networks to study individual differences should depend on whether or not one wants to take into account state dependencies of the observed networks.

neuroscience↗

bioRxiv2020

QSIPrep: An integrative platform for preprocessing and reconstructing diffusion MRI

Diffusion-weighted magnetic resonance imaging (dMRI) has become the primary method for non-invasively studying the organization of white matter in the human brain. While many dMRI acquisition sequences have been developed, they all sample q-space in order to characterize water diffusion. Numerous software platforms have been developed for processing dMRI data, but most work on only a subset of sampling schemes or implement only parts of the processing workflow. Reproducible research and comparisons across dMRI methods are hindered by incompatible software, diverse file formats, and inconsistent naming conventions. Here we introduce QSIPrep, an integrative software platform for the processing of diffusion images that is compatible with nearly all dMRI sampling schemes. Drawing upon a diverse set of software suites to capitalize upon their complementary strengths, QSIPrep automatically applies best practices for dMRI preprocessing, including denoising, distortion correction, head motion correction, coregistration, and spatial normalization. Throughout, QSIPrep provides both visual and quantitative measures of data quality as well as "glass-box" methods reporting. Taken together, these features facilitate easy implementation of best practices for processing of diffusion images while simultaneously ensuring reproducibility.

bioinformatics↗

bioRxiv2018

Reconfigurations within resonating communities of brain regions following TMS reveal different scales of processing

1An overarching goal of neuroscience research is to understand how heterogeneous neuronal ensembles cohere into networks of coordinated activity to support cognition. To investigate how local activity harmonizes with global signals, we measured electroencephalography (EEG) while single pulses of transcranial magnetic stimulation (TMS) perturbed occipital and parietal cortices. We estimate the rapid network reconfigurations in dynamic network communities within specific frequency bands of the EEG, and characterize two distinct features of network reconfiguration, flexibility and allegiance, among spatially distributed neural sources following TMS. Using distance from the stimulation site to infer local and global effects, we find that alpha activity (8-12Hz) reflects concurrent local and global effects on network dynamics. Pair-wise allegiance of brain regions to communities on average increased near the stimulation site, whereas TMS-induced changes to flexibility were generally invariant to distance and stimulation site. In contrast, communities within the beta (13-20Hz) band demonstrated a high level of spatial specificity, particularly within a cluster comprising paracentral areas. Together, these results suggest that focal magnetic neurostimulation to distinct cortical sites can help identify both local and global effects on brain network dynamics, and highlight fundamental differences in the manifestation of network reconfigurations within alpha and beta frequency bands. 2 Author SummaryTMS may be used to probe the causal link between local regional activity and global brain dynamics. Using simultaneous TMS-EEG and dynamic community detection, we introduce what we call "resonating clusters", or frequency band-specific communities in the brain, as a way to index local and global processing. These resonating clusters within the alpha and beta bands brain display both global (or integrating) behavior and local specificity, highlighting fundamental differences in the manifestation of network reconfigurations.

neuroscience↗

bioRxiv2018

Response Inhibition in Adolescents is Moderated by Brain Connectivity and Social Network Structure

Self-control is vital for a wide range of outcomes across our lifespan, yet the developmental trajectory of its core components during adolescence remains elusive. Many adolescents can successfully regulate their behavior even when they do not show strong activation in brain regions typically recruited during self-control in adults. Thus, adolescents may rely on other neural and cognitive resources to compensate, including daily experiences navigating and managing complex social relationships that likely bolster self-control processes. Here, we tested whether activity and connectivity in brain systems associated with social cognition (i.e., self-processing and mentalizing) facilitated successful self-control. We measured brain activity using fMRI as 62 adolescents completed a Go/No-Go response inhibition task. Recruitment of social brain systems, especially the self-processing system, was associated with better response inhibition in adolescents. Interestingly, the reliance on the self-processing system was stronger in adolescents with weaker activation in the canonical response inhibition system, suggesting a compensatory role for social brain systems during adolescent development. Furthermore, we examined the importance of social context by computing the size, number of communities, and modularity of our participants real-life social network. We found that adolescents with more friends and more communities in their social networks demonstrated a stronger relationship between response inhibition and recruitment of social brain systems. Collectively, our results identify the importance of social context and its moderating role on the relationship between brain activity and behavior. Furthermore, our results indicate a critical role for social brain systems during the developmental trajectory of self-control throughout adolescence.\n\nSignificance StatementWe employed a network neuroscience approach to investigate the role of social context and social brain systems in facilitating self-control in adolescents. We found that recruitment of social brain systems was associated with better response inhibition in adolescents, especially for adolescents with weaker activation in the response inhibition system. Moreover, adolescents with more friends and communities in their social networks showed stronger relationships between response inhibition and recruitment of social brain systems. Our results advance understanding of how brain systems facilitate self-control in adolescents, and how these brain responses are associated with features of an adolescents real-life social network. Bringing together findings related to brain networks and social networks provides key insights into how biology and environment mutually influence development.

neuroscience↗

bioRxiv2017

Applications of community detection techniques to brain graphs: Algorithmic considerations and implications for neural function

The human brain can be represented as a graph in which neural units such as cells or small volumes of tissue are heterogeneously connected to one another through structural or functional links. Brain graphs are parsimonious representations of neural systems that have begun to offer fundamental insights into healthy human cognition, as well as its alteration in disease. A critical open question in network neuroscience lies in how neural units cluster into densely interconnected groups that can provide the coordinated activity that is characteristic of perception, action, and adaptive behaviors. Tools that have proven particularly useful for addressing this question are community detection approaches, which can be used to identify communities or modules in brain graphs: groups of neural units that are densely interconnected with other units in their own group but sparsely interconnected with units in other groups. In this paper, we describe a common community detection algorithm known as modularity maximization, and we detail its applications to brain graphs constructed from neuroimaging data. We pay particular attention to important algorithmic considerations, especially in recent extensions of these techniques to graphs that evolve in time. After recounting a few fundamental insights that these techniques have provided into brain function, we highlight potential avenues of methodological advancements for future studies seeking to better characterize the patterns of coordinated activity in the brain that accompany human behavior. This tutorial provides a naive reader with an introduction to theoretical considerations pertinent to the generation of brain graphs, an understanding of modularity maximization for community detection, a resource of statistical measures that can be used to characterize community structure, and an appreciation of the utility of these approaches in uncovering behaviorally-relevant network dynamics in neuroimaging data.

neuroscience↗