Search bioRxivSearch

Biology subjects

Vernerey, F. J.

Publications and source records attributed to Vernerey, F. J..

2 recordsLinked to original sources

Enhanced diffusion by reversible binding to active polymers

Cells are known to use reversible binding to active biopolymer networks to allow diffusive transport of particles in an otherwise impenetrable mesh. We here determine the motion of a particle that experiences random forces during binding and unbinding events while being constrained by attached polymers. Using Monte-Carlo simulations and a statistical mechanics model, we find that enhanced diffusion is possible with active polymers. However, this is possible only under optimum conditions that has to do with the relative length of the chains to that of the plate. For example, in systems where the plate is shorter than the chains, diffusion is maximum when many chains have the potential to bind but few remain bound at any one time. Interestingly, if the chains are shorter than the plate, we find that diffusion is maximized when more active chains remain transiently bound. The model provides insight into these findings by elucidating the mechanisms for binding-mediated diffusion in biology and design rules for macromolecular transport in transient synthetic polymers. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=92 SRC="FIGDIR/small/428690v1_ufig1.gif" ALT="Figure 1"> View larger version (20K): org.highwire.dtl.DTLVardef@1f09992org.highwire.dtl.DTLVardef@f26b4borg.highwire.dtl.DTLVardef@162368corg.highwire.dtl.DTLVardef@eb2b45_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics

Computational exploration of treadmilling and protrusion growth observed in fire ant rafts

Condensed active matter systems regularly achieve cooperative emergent functions that individual constituents could not accomplish alone. The rafts of fire ants (Solenopsis invicta) are often studied in this context for their ability to create structures comprised entirely of their own bodies, including tether-like protrusions that facilitate exploration of flooded environments. While similar protrusions are observed in cytoskeletons and cellular aggregates, they are generally dependent on morphogens or external gradients leaving the isolated role of local interactions poorly understood. Here we demonstrate through an ant-inspired, agent-based numerical model how protrusions in ant rafts may emerge spontaneously due to local interactions and how phases of exploratory protrusion growth may be induced by increased ant activity. These results provide an example in which functional morphogenesis of condensed active matter may emerge purely from locally-driven collective motion and may provide a source of inspiration for the development of autonomous active matter and swarm robotics.

biophysics