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Vanessa Jonsson

Publications and source records attributed to Vanessa Jonsson.

2 recordsLinked to original sources

Synthesizing Combination Therapies for Evolutionary Dynamics of Disease for Nonlinear Pharmacodynamics

Our previous results proposed an iterative scalable algorithm for the systematic design of sparse, small gain feedback strategies that stabilize the evolutionary dynamics of a generic disease model with linear pharmacodynamics. In this manuscript, we use piecewise linear approximations to model nonlinear drug effects. We leverage results from optimal controller synthesis for positive systems to formulate the feedback synthesis problem as an optimization problem that sequentially explores piecewise linear subsystems corresponding to higher and higher treatment dosages.

Evolutionary Biology

A Scalable Formulation for Engineering Combination Therapies for Evolutionary Dynamics of Disease

It has been shown that optimal controller synthesis for positive systems can be formulated as a linear program. Leveraging these results, we propose a scalable iterative algorithm for the systematic design of sparse, small gain feedback strategies that stabilize the evolutionary dynamics of a generic disease model. We achieve the desired feedback structure by augmenting the optimization problems with {ell}1 and {ell}2 regularization terms, and illustrate our method on an example inspired by an experimental study aimed at finding appropriate HIV neutralizing antibody therapy combinations in the presence of escape mutants.

Evolutionary Biology