Biology subjects

Umina, P. A.

Publications and source records attributed to Umina, P. A..

16 recordsLinked to original sources

bioRxiv2026

Novel but stable endosymbionts have contrasting effects on aphid dispersal and plant feeding damage in the cereal pest Diuraphis noxia

Endosymbiotic bacteria can affect many ecological attributes of their insect hosts, including (in herbivorous insects) how insects interact with plants where they feed. This raises the issue of whether deliberate endosymbiont introductions could be used to decrease crop damage caused by insect pests. Here we investigate how transinfecting Rickettsiella viridis and Regiella insecticola endosymbionts into a novel pest aphid host, the Russian wheat aphid (Diuraphis noxia), influences population growth, alate production, dispersal ability and crop damage. Both the Rickettsiella (originating from pea aphids) and Regiella (from green peach aphids) were stably maintained in their new host where they had contrasting effects. Rickettsiella increased the severity of aphid damage on wheat and barley, resulting in greater leaf loss, chlorotic streaking, and higher aphid populations, whereas Regiella reduced aphid population growth and the severity of feeding damage by aphids. Their effects on dispersal morphology also differed: Regiella had no detectable impact on alate incidence, while Rickettsiella consistently suppressed wing formation in small cages, and in larger mesocosms with multiple wheat plants this endosymbiont suppressed dispersal. Endosymbiont-mediated changes in feeding damage did not involve the main plant immune response pathways: transinfected and wild type aphids induced similar levels of jasmonic acid, jasmonic acid-isoleucine, and salicylic acid in plant tissues, even though these plant defenses were strongly activated during aphid feeding. Novel endosymbionts can therefore modulate the severity of plant feeding damage by aphids as well as influencing aphid dispersal. Potential applications in controlling pest D. noxia populations are discussed. Significance statementEndosymbiotic bacteria that live within insect cells can have wide-ranging effects on the reproduction and fitness of their insect hosts in different environments. In herbivorous insects this includes effects on host plant use. Here we test if novel endosymbionts in a pest aphid, the Russian wheat aphid, might be used to decrease crop damage and dispersal. We show that the damage caused to wheat and barley plants from aphid feeding is modulated by novel but stably transmitted introduced endosymbionts. One endosymbiont (Rickettsiella) increased the severity of damage but decreased aphid dispersal, while another (Regiella) decreased damage severity without impacting dispersal. These contrasting effects may be associated with changes in aphid population growth and wing formation but were not linked to key plant immune response pathways. We discuss implications of these findings for using endosymbionts in agricultural pest management. Classification: Applied Biological Sciences, microbiology

microbiology↗

bioRxiv2024

Spread of a single superclone drives insecticide resistance in Acyrthosiphon kondoi across an invasive range

Populations under similar selection pressures may adapt via parallel evolution or dispersal of advantageous alleles. Here, we investigated insecticide resistance in the invasive blue-green aphid, Acyrthosiphon kondoi, which reproduces clonally in Australia and has rapidly developed resistance across geographic locations. Using genomic, transcriptomic, and experimental approaches, we explored the evolutionary origins and molecular mechanisms of resistance. We developed the first nuclear genome assembly for A. kondoi (443.8 Mb, 28,405 annotated genes, BUSCO score 97.5%) and a partial mitochondrial assembly (11,598 bp). All resistant strains shared a common ancestor, supporting the spread of a resistant superclone lineage that is distinct from susceptible strains. Resistance was associated with over-expression of an esterase gene that was homologous to E4/FE4 esterases in other aphid pests that are linked to resistance. Functional experiments in Drosophila melanogaster confirmed a causal role of this E4- like esterase in resistance to organophosphates, carbamates, and pyrethroids. These findings highlight how clonal dispersal and insecticide overuse can transform local adaptation into a widespread pest management issue. Our results suggest a parallel macroevolutionary response to insecticide selection in A. kondoi and other aphid species at the gene family level, but with a distinct regulatory mechanism in A. kondoi. Given the rapid spread of the resistant superclone, alternative management strategies, including expanded chemical control options and enhanced biological control, are urgently needed to mitigate this growing pest problem.

evolutionary biology↗

bioRxiv2024

The ecological and economic benefits of sustainable agricultural practices: Evidence from on-farm trials in broad-acre grain crops

O_LISustainable agricultural practices are essential for mitigating the negative environmental impacts of conventional agriculture while ensuring food security. However, widespread adoption of these practices requires robust evidence of their efficacy and economic viability. C_LIO_LIWe co-designed a two-year field trial with farmers and agronomy advisors in Australia, to evaluate the ecological and economic benefits of sustainable agricultural practices for managing the redlegged earth mite, a major pest of Australian grain crops. We compared Novel treatments representing long-term farmer-implemented sustainable agricultural practices based on biological control with Conventional treatments and Plus treatments designed as counterfactuals to disentangle the effects of specific pest control and plant nutrient components. C_LIO_LIRedlegged earth mite densities remained below economic thresholds across all treatments and years, demonstrating effective pest control in both conventional and sustainable systems. Notably, the Novel treatment supported higher densities of beneficial arthropods, indicating increased biological control potential. C_LIO_LIYield and gross profit margins were generally similar between the treatments, indicating that sustainable agriculture practices can maintain profitability while fostering biodiversity. Practical implication. Our study provides evidence that biological control and biofertiliser supplementation can be effectively used to manage agricultural pests and demonstrates the value of close collaboration with farmers and agronomy advisors to conduct ecological field research that has practical applications. C_LI

ecology↗

bioRxiv2024

A persistent bacterial Regiella transinfection in the bird cherry-oat aphid Rhopalosiphum padi increasing host fitness and decreasing plant virus transmission

The bird cherry-oat aphid, Rhopalosiphum padi, is a major pest of agriculture due to its ability to directly damage crops and transmit plant viruses. As industries move away from chemical pest control, there is interest in exploring new options to suppress the impact of this pest. Here we describe the production of a transinfected line of R. padi carrying the bacterial endosymbiont, Regiella insecticola, originating from the green peach aphid, Myzus persicae. We show that Regiella increases the fitness of its novel host despite decreasing fitness in its native host. Regiella also shows a low level of horizontal transmission. Importantly the infection suppresses the ability of R. padi to transmit the barley yellow dwarf virus which damages wheat plants. This transinfection could be released to suppress virus transmission by aphids with its ability to persist and spread, making it potentially suitable for wide area release.

microbiology↗

bioRxiv2024

The endosymbiont Rickettsiella viridis increases the virulence of Diuraphis noxia but reduces alate frequency

Aphids are among the worlds most economically damaging pests and carry a diverse range of bacterial endosymbionts. There is increasing interest in exploring potential applications of natural and novel strains of endosymbionts in aphid control. One endosymbiont, Rickettsiella viridis, has a large fitness cost following transfer from its natural aphid host Acyrthosiphon pisum into a novel host aphid Myzus persicae. Here, we investigated host impacts after transferring the same Rickettsiella strain to an important cereal aphid, the Russian wheat aphid Diuraphis noxia. Rickettsiella in this host resulted in modest fitness effects, with a minor increase in heat tolerance and a decrease in development time at 25{degrees} C. The infection persisted in mixed caged populations under different temperatures. Surprisingly, Rickettsiella increased aphid virulence to wheat plants and to two non-crop hosts of D. noxia, barley grass and brome grass. This was evident from sharper decreases in leaf number and leaf area, as well as an increase in chlorotic streaking when plants were exposed to Rickettsiella-infected D. noxia. Rickettsiella also reduced the proportion of alates in aphids held in small cages and in larger mesocosms containing multiple wheat plants where short-distance dispersal of aphids was impacted. These results provide compelling evidence that Rickettsiella can affect virulence - the first case of an endosymbiont transfer directly influencing aphid virulence to host plants - and highlight the species-specific impacts of endosymbiont transfers on aphids which can involve multiple traits.

microbiology↗

bioRxiv2024

Acute toxicity effects of pesticides on beneficial organisms - Dispelling myths for a more sustainable use of chemicals in agricultural environments

Agricultural practitioners, researchers and policymakers are increasingly advocating for integrated pest management (IPM) to reduce pesticide use while preserving crop productivity and profitability. Selective pesticides, putatively designed to act on pests while minimising impacts on off-target organisms, have emerged as one such option - yet evidence of whether these compounds control pests without adversely affecting natural enemies and other beneficial species (henceforth beneficials) remains scarce. At present, the selection of pesticides compatible with IPM often considers a single (or a limited number of) widely distributed beneficial species, without considering undesired effects on co-occurring beneficials. In this study, we conducted standardised laboratory bioassays to assess the acute toxicity effects of 20 chemicals on 15 beneficial species at multiple exposure timepoints, with the specific aims to: (1) identify common and diverging patterns in acute toxicity responses of tested beneficials; (2) determine if the effect of pesticides on beetles, wasps and mites is consistent across species within these groups; and (3) assess the impact of mortality assessment timepoints on International Organisation for Biological Control (IOBC) toxicity classifications. Our work demonstrates that in most cases, chemical toxicities cannot be generalised across a range of beneficial insects and mites providing biological control, a finding that was found even when comparing impacts among closely related species of beetles, wasps and mites. Additionally, we show that toxicity impacts increase with exposure length, pointing to limitations of IOBC protocols. This work challenges the notion that chemical toxicities can be adequately tested on a limited number of representative species; instead it highlights the need for careful consideration and testing on a range of regionally and seasonally relevant beneficial species.

pharmacology and toxicology↗

bioRxiv2023

'Drifting' Buchnera genomes track the microevolutionary trajectories of their aphid hosts

Evolution of Buchnera-aphid host symbioses is often studied among species at macroevolutionary scales. Investigations within species offer a different perspective about how eco-evolutionary processes shape patterns of genetic variation at microevolutionary scales. Our study leverages new and publicly available whole-genome sequencing data to study Buchnera-aphid host evolution in Myzus persicae, the peach potato aphid, a globally invasive and polyphagous pest. Across 43 different asexual, clonally reproducing isofemale strains, we examined patterns of genomic covariation between Buchnera and their aphid host and considered the distribution of mutations in protein-coding regions of the Buchnera genome. We found Buchnera polymorphisms within aphid strains, suggesting the presence of genetically different Buchnera strains within the same clonal lineage. Genetic distance between pairs of Buchnera samples was positively correlated to genetic distance between their aphid hosts, indicating shared evolutionary histories. However, there was no segregation in the genetic variation of both M. persicae and Buchnera with plant host (Brassicaceae and non-tobacco Solanaceae) and no associations between genetic and geographic distance at global or regional spatial scales. Abundance patterns of non-synonymous mutations were similar to synonymous mutations in the Buchnera genome, and both mutation classes had similar site frequency spectra. We hypothesize that a predominance of neutral processes results in the Buchnera of M. persicae to simply drift with the evolutionary trajectory of their aphid hosts. Our study presents a unique microevolutionary characterisation of Buchnera-aphid host genomic covariation across multiple aphid clones. This provides a new perspective on the eco-evolutionary processes generating and maintaining polymorphisms in a major pest aphid species and its obligate primary endosymbiont.

evolutionary biology↗

bioRxiv2023

Acute toxicity effects of pesticides on predatory snout mites (family Bdellidae)

Predatory mites biologically control a range of arthropod crop pests and are often central to agricultural IPM strategies globally. Conflict between chemical and biological pest control has prompted increasing interest in selective pesticides with fewer off-target impacts on beneficial invertebrates, including predatory mites. However, the range of predatory mite species included in standardised pesticide toxicity assessments does not match the diversity of naturally-occurring species contributing to biocontrol, with most testing carried out on species from the family Phytoseiidae. Here, we aim to bridge this knowledge gap by investigating the impacts of 22 agricultural pesticides on the predatory snout mite Odontoscirus lapidaria (Kramer) (family Bdellidae). Using internationally standardised testing methodologies, we identified several active ingredients with minimal impact on O. lapidaria mortality, including Bacillus thuringiensis, nuclear polyhedrosis virus, flonicamid, afidopyropen, chlorantraniliprole and cyantraniliprole, which may therefore be good candidates for IPM strategies utilising both chemical and biological control. Importantly, we reveal differences between Bdellidae and Phytoseiidae in responses to a number of chemicals, including the miticides diafenthiuron and abamectin, highlighting the risk of making generalisations around acute toxicity based on tests with one beneficial mite family. We also explored the impacts of several pesticides on a second Bdellidae species and found differences in the response to chlorpyrifos compared with O. lapidaria, further highlighting the taxon-specific nature of non-target toxicity effects.

pharmacology and toxicology↗

bioRxiv2022

Evolution of an acetylcholinesterase gene complex and its contribution to organophosphate insensitivity in an invasive mite pest

BACKGROUNDInvasive Australian populations of redlegged earth mite, Halotydeus destructor (Tucker), are evolving increasing organophosphate resistance. In addition to the canonical ace gene, the target gene of organophosphates, the H. destructor genome contains many radiated ace-like genes that vary in copy number and amino acid sequence. In this work, we characterise copy number and target-site mutation variation at the canonical ace and ace-like genes and test for potential associations with organophosphate insensitivity. This was achieved through comparisons of whole-genome pool-seq data from alive and dead mites following organophosphate exposure. RESULTSA combination of increased copy number and target-site mutations at the canonical ace was associated with organophosphate insensitivity in H. destructor. Resistant populations were segregating for G119S, A201S, F331Y at the canonical ace. A subset of populations also had copy numbers of canonical ace >2, which potentially helps over-express proteins carrying these target-site mutations. Haplotypes possessing different copy numbers and target-site mutations of the canonical ace gene may be under selection across H. destructor populations. We also detected some evidence that increases in copy number of radiated ace-like genes are associated with organophosphate insensitivity, which might suggest potential roles in sequestration or breakdown of organophosphates. CONCLUSIONDifferent combinations of target-site mutations and (or) copy number variation in the canonical ace and ace-like genes may provide non-convergent ways for H. destructor to respond to organophosphate selection. However, these changes may only play a partial role in organophosphate insensitivity, which appears to have a polygenic architecture.

evolutionary biology↗

bioRxiv2022

The redlegged earth mite draft genome provides new insights into pesticide resistance evolution and demography in its invasive Australian range

Genomic data provide valuable insights into pest management issues such as resistance evolution, historical patterns of pest invasions and ongoing population dynamics. We assembled the first reference genome for the redlegged earth mite, Halotydeus destructor (Tucker, 1925), to investigate adaptation to pesticide pressures and demography in its invasive Australian range using whole-genome pool-seq data from regionally distributed populations. Our reference genome comprises 132 autosomal contigs, with a total length of 48.90 Mb. We observed a large complex of ace genes, which has presumably evolved from a long history of organophosphate selection in H. destructor and may contribute toward organophosphate resistance through copy number variation, target-site mutations, and structural variants. In the putative ancestral H. destructor ace gene, we identified three target-site mutations (G119S, A201S, and F331Y) segregating in organophosphate resistant populations. Additionally, we identified two new para sodium channel gene mutations (L925I and F1020Y) that may contribute to pyrethroid resistance. Regional structuring observed in population genomic analyses indicates that gene flow in H. destructor does not homogenise populations across large geographic distances. However, our demographic analyses were equivocal on the magnitude of gene flow; the short invasion history of H. destructor makes it difficult to distinguish scenarios of complete isolation vs. ongoing migration. Nonetheless, we identified clear signatures of reduced genetic diversity and smaller inferred effective population sizes in eastern vs. western populations, which is consistent with the stepping-stone invasion pathway of this pest in Australia. These new insights will inform development of diagnostic genetic markers of resistance, further investigation into the multifaceted organophosphate resistance mechanism, and predictive modelling of resistance evolution and spread.

genomics↗

bioRxiv2022

Incorporating selection pressures into risk predictions of chemical resistance evolution in pest organisms

Chemical resistance in pest organisms threatens global food security and human health, yet resistance issues are mostly dealt with reactively. Predictive models of resistance risk provide an avenue for field practitioners to implement proactive pest management but require knowledge of factors that drive resistance evolution. Despite the importance of chemical selection pressure on resistance evolution, poor availability of chemical usage data has limited the use of a general multi-species measure of selection pressure in predictive models. We demonstrate the use of pesticide product registrations as a predictor of resistance status and potential proxy of chemical selection pressure. Pesticide product registrations were obtained for 427 USA and 209 Australian agricultural arthropod pests, for 42 and 39 chemical Mode of Action (MoA) groups, respectively. We constructed Bayesian logistic regressions of resistance status as a function of the number of pesticide product registrations and two ecological traits, phagy and voltinism. Our models were well-supported with demonstrated power to discriminate between resistant and susceptible observations in both USA and Australian species sets using cross-validation. Importantly, we observed strong support for a positive association between pesticide products and resistance status. Our work expands the horizon for proactive management by quantitatively linking a proxy for selection pressure on pest species to different chemical MoAs. This proxy for selection pressure can be combined with ecological information to predict the resistance risk in agricultural pests. Because pesticide product registrations can typically be derived from publicly available data, we believe there is broad applicability to other agricultural pests such as weeds and fungi, and to other geographical regions beyond the USA and Australia.

evolutionary biology↗

bioRxiv2022

Genome-wide SNPs of vegetable leafminer, Liriomyza sativae: insights into the recent Australian invasion

Liriomyza sativae, the vegetable leafminer, is a serious agricultural pest originally from the Americas which has now colonized all continents except Antarctica. In 2015, L. sativae arrived on the Australian mainland and established on the Cape York Peninsula in the northeast of the country. Here, we assessed genetic variation in L. sativae based on genome-wide single nucleotide polymorphisms (SNPs) generated by double-digest restriction-site associated DNA sequencing (ddRAD-seq) to uncover the potential origin(s) of this pest in Australia and contribute to reconstructing its global invasion history. Our principal component analyses (PCA) results suggested that Australian mainland populations were genetically close to populations from the Torres Strait and had connections to Bali and Papua New Guinea (PNG), whereas populations from Asia and Africa were more distantly related. Hawaii was genetically distinct from populations from Asia, Africa and Australia. Co-ancestry analyses pointed to signals of gene flow from the Torres Strait into the Australian mainland, while Indonesia/PNG were the likely sources of the initial invasion into the Torres Strait. Admixture analyses further revealed that L. sativae from the Torres Strait had genetic diversity originating from multiple sources, which has now spread to the Australian mainland. The L. sativae lineages from Asia/Africa appear closely related and may share co-ancestry. Isolation by distance (IBD) was found at a broad global scale, but not within small regions, suggesting human-mediated factors contribute to the local spread of this pest. Overall, our findings highlight the challenges in quarantine measures aimed at restricting the distribution of this global pest.

bioinformatics↗

bioRxiv2021

Is what you see what you get? The relationship between field observed and actual aphid parasitism rates in canola crops

BACKGROUNDEstimating parasitoid abundance in the field can be difficult, even more so when attempting to quantify parasitism rates and the ecosystem service of biological control that parasitoids can provide. To understand how observed parasitism rates (in-field mummy counts) of the green peach aphid, Myzus persicae (Sulzer) (Homoptera: Aphididae) translate to actual parasitism rates (laboratory-reared parasitoid counts), field work was undertaken in Australian canola fields over a growing season. Parasitoids were reared within a controlled laboratory setting. RESULTSTotal observed and actual parasitism rates of M. persicae varied considerably across regions, but less so on a field level. Overall, actual parasitism was on average 2.4 times higher than that observed in the field, with rates an average of 4-fold higher in South Australia. As crop growth stage progressed, the percentage of mummies observed increased. Percentage of parasitoids reared also increased with crop growth stage, averaging 3.4% during flowering and reaching 14.4% during podding/senescing. Although there was a greater diversity of reared parasitoid species at later crop growth stages, actual parasitism rate was unaffected by parasitoid species. Diaeretiella rapae was the most commonly reared parasitoid, increasing in abundance with crop growth stage. CONCLUSIONThese findings indicate that mummy counts alone do not provide a clear representation of parasitism within fields.

zoology↗

bioRxiv2021

The effects of insecticide seed treatments on green peach aphid Myzus persicae (Sulzer) (Homoptera: Aphididae) parasitism by Aphidius colemani Viereck (Hymenoptera: Aphidiidae) and predation by Mallada signatus (Schneider) (Neuroptera: Chrysopidae)

The green peach aphid, Myzus persicae (Sulzer) (Homoptera: Aphididae), is a major pest of Brassica L. species in Australia, where it can transmit >100 viruses. Globally, this species has evolved resistance to 74 insecticides from numerous chemical groups. Although Integrated Pest Management (IPM) strategies are being implemented, chemical treatment remains the predominant method used to control aphids. Insecticide seed treatments are viewed as a softer alternative to chemical sprays and are widely used in Australian canola fields. The effects of imidacloprid, thiamethoxam, and a mixture of thiamethoxam & lambda-cyhalothrin canola seed treatments were investigated on the parasitoid, Aphidius colemani Viereck (Hymenoptera: Aphidiidae) and the predator, the green lacewing Mallada signatus (Schneider) (Neuroptera: Chrysopidae); both important natural enemies of M. persicae. The number of mummies formed by A. colemani on the untreated plants was lower than those formed on the thiamethoxam & lambda-cyhalothrin and imidacloprid treated plants. The number of A. colemani reared from mummies on thiamethoxam & lambda-cyhalothrin plants was higher than those reared from thiamethoxam and untreated plants. Significant effects of insecticide seed treatments were only noted for mummies produced while the parent parasitoids were on the plants, not for those mummies produced after their removal. This suggests seed treatment effects were immediate but not long lasting. Based on cumulative parasitoid survival days for two generations, A. colemani exposed to thiamethoxam & lambda-cyhalothrin and imidacloprid treatments had a greater fitness than those exposed to the thiamethoxam and untreated controls, possibly due to the phenomenon of insecticide hormoligosis. Despite the treatment effects observed, we did not detect any behavioural differences in M. persicae or A. colemani. Mallada signatus were not negatively affected by feeding on M. persicae on insecticide seed treated plants, suggesting they are more tolerant of seed treatments than A. colemani. The findings from this study provide a useful platform for further experimentation on the effects of seed treatments on natural enemies of M. persicae.

zoology↗

bioRxiv2021

Taxonomy, distribution and host relationships of aphidiine wasps (Hymenoptera: Aphidiidae) parasitizing aphids (Hemiptera: Aphididae) in Australia grain production landscapes

Aphid parasitoids (Hymenoptera; Aphidiidae) were surveyed within grain production landscapes in Victoria, Australia between 2017 and 2018, as well as more sporadically nationwide between 2016 and 2019. In addition, aphidiine records were collated from insect depositories around Australia and online databases. The 5551 specimens recorded constituted a total of 23 species and seven genera. Diaeretiella rapae (MIntosh) was the most common species, representing more than 70% of all aphidiines recorded. This species also showed a greater northerly geographic range than other aphidiines. During sampling between 2017 and 2019, aphidiines were reared from mummies to ascertain host-parasitoid relationships. Diaeretiella rapae was again the most commonly reared parasitoid, although aphidiine preference varied with aphid host and between states and territories. An illustrated dichotomous key to Australian aphidiines in grain production landscapes is provided for the 11 species sampled in our field surveys. This is the first comprehensive review of aphidiines sampled within Australia in over two decades. Knowledge about the diversity and distribution of these parasitoids is important for understanding their impact on current and future invasions of aphid species. In addition, understanding the interactions between grain aphids and their associated parasitoids will further support the inclusion of parasitoid wasps into integrated pest management (IPM) strategies.

zoology↗

bioRxiv2019

Forecasting the potential distribution of the invasive vegetable leafminer using "top-down" and "bottom-up" models

The vegetable leafminer, Liriomyza sativae, is an internationally significant pest of vegetable and flower crops, that was detected for the first time on the Australian mainland in 2015. Due to the early stage of its invasion in Australia, it is unclear how climatic conditions are likely to support and potentially restrict the distribution of L. sativae as it expands into a novel range and threatens agricultural production regions. Here we predicted the future establishment potential of L. sativae in Australia, using both a novel bottom-up process-based model and a popular top-down correlative species distribution model (SDM), leveraging the unique strengths of each approach. Newly compiled global distribution data spanning 42 countries was used to validate the process-based model of establishment potential based on intrinsic population growth rates, as well as parameterise the correlative SDM. Both modelling approaches successfully captured the international distribution of L. sativae based on environmental variables and predicted the high suitability of non-occupied ranges, including northern regions of Australia. The largely unfilled climatic niche available to L. sativae in Australia demonstrates the early stage of its Australian invasion, and highlights locations where important vegetable and nursery production regions in Australia are highly vulnerable to L. sativae establishment.

ecology↗