Biology subjects

Ucar, M. C.

Publications and source records attributed to Ucar, M. C..

4 recordsLinked to original sources

bioRxiv2026

Self-organized tiling generates tissue-scale hyperuniformity during development

Biological tissues require branched cellular architectures to maximize spatial coverage while minimizing redundancy. Yet, how cells decode local spatial information to collectively tile territories without a global blueprint remains a key open question. Here, we develop a biophysical theory of interacting branched cells, and show that coupling their growth to short-range repulsion drives efficient tiling with minimal territorial overlap. Our model predicts that the same local mechanism simultaneously suppresses long-range density fluctuations, driving the cellular collective toward hyperuniformity. We confirm these theoretical predictions with experiments on microglial patterning in the developing retina, and show that perturbations resulting in limited cell growth disrupt both tiling and fluctuation suppression. Our results reveal that two seemingly distinct optimization principles of biological patterning, large-scale regularity and efficient tiling, are intimately linked and can arise from a single growth-repulsion feedback, suggesting a general principle for self-organized tissue coverage.

biophysics↗

bioRxiv2024

Self-generated chemotaxis of mixed cell populations

Cell and tissue movement in development, cancer invasion, and immune response relies on chemical or mechanical guidance cues. In many systems, this behavior is locally guided by self-generated signaling gradients rather than long-range, pre-patterned cues. However, how heterogeneous mixtures of cells interact non-reciprocally and navigate through self-generated gradients remains largely unexplored. Here we introduce a theoretical framework for the self-organized chemotaxis of heterogeneous cell populations. We find that relative chemotactic sensitivity of cell populations controls their long-time coupling and co-migration dynamics, with boundary conditions such as external cell- and attractant reservoirs substantially influencing the migration patterns. We further predict an optimal parameter regime that leads to robust and colocalized migration. We test our theoretical predictions with in vitro experiments demonstrating the co-migration of different immune cell populations, and quantitatively reproduce observed migration patterns under wild-type and perturbed conditions. Interestingly, immune cell co-migration appears close to the predicted optimal regime. Finally, we incorporate mechanical interactions into our framework, revealing a phase diagram that illustrates non-trivial interplays between chemotactic and mechanical non-reciprocity in driving collective migration. Together, our findings suggest that self-generated chemotaxis is a robust strategy for emergent multicellular navigation.

biophysics↗

bioRxiv2022

Sinking the way: a dual role for CCR7 in collective leukocyte migration

Immune responses crucially rely on the rapid and coordinated locomotion of leukocytes. While it is well established that single-cell migration is often guided by gradients of chemokines and other chemoattractants, it remains poorly understood how such gradients are generated, maintained and modulated. Combining experiment and theory on leukocyte chemotaxis guided by the G protein-coupled receptor (GPCR) CCR7, we demonstrate that in addition to its role as the sensory receptor that steers migration, CCR7 also acts as a generator and modulator of chemotactic gradients. Upon exposure to the CCR7 ligand CCL19, dendritic cells (DCs) effectively internalize the receptor and ligand as part of the canonical GPCR-desensitization response. We show that CCR7 internalization also acts as an effective sink for the chemoattractant, thereby dynamically shaping the spatio-temporal distribution of the chemokine. This mechanism drives complex collective migration patterns, enabling DCs to create or sharpen chemotactic gradients. We further show that these self-generated gradients can sustain the long-range guidance of DCs, adapt collective migration patterns to the size and geometry of the environment, as well as provide a guidance cue for other co-migrating cells. Such dual role of CCR7 as a GPCR that both senses and consumes its ligand can thus provide a novel mode of cellular self-organization.

cell biology↗

bioRxiv2021

Theory of branching morphogenesis by local interactions and global guidance

Branching morphogenesis governs the formation of many organs such as lung, kidney, and the neurovascular system. Many studies have explored system-specific molecular and cellular regulatory mechanisms, as well as self-organizing rules underlying branching morphogenesis. However, in addition to local cues, branched tissue growth can also be influenced by global guidance. Here, we develop a theoretical framework for a stochastic self-organized branching process in the presence of external cues. Combining analytical theory with numerical simulations, we predict differential signatures of global vs. local regulatory mechanisms on the branching pattern, such as angle distributions, domain size, and space-filling efficiency. We find that branch alignment follows a generic scaling law determined by the strength of global guidance, while local interactions influence the tissue density but not its overall territory. Finally, using zebrafish innervation as a model system, we test these key features of the model experimentally. Our work thus provides quantitative predictions to disentangle the role of different types of cues in shaping branched structures across scales.

biophysics↗