Biology subjects

Tuerkaydin, B.

Publications and source records attributed to Tuerkaydin, B..

2 recordsLinked to original sources

bioRxiv2026

Energetic cross-talk of filter gate and lower helices drives polymodal regulation and disease in TREK K2P channels

The TREK subfamily of two-pore domain potassium (K2P) channels are essential regulators of membrane excitability, and their activity is modulated by a wide range of physiological stimuli, including phosphorylation and membrane stretch. Single-site mutations in this subfamily have been identified in patients with FHEIG symptom (facial dysmorphism, hypertrichosis, epilepsy, intellectual disability/developmental delay, and gingival overgrowth), where they cause pathological channel hyperactivation. Using OneOPES framework, which unifies multiple enhanced-sampling molecular dynamics strategies, we provide a detailed energetic characterization of the TREK-2 conformational landscape. Our simulations uncover a unifying mechanism in which coupling between the lower transmembrane helices, the proximal C-terminal domain, and selectivity filter stability governs channel gating under different physiological stimuli, as well as disease-mimicking conditions. The predicted conformational effects of an FHEIG syndrome-associated mutation were further validated by electrophysiological measurements using a conformation-sensitive TREK-2 inhibitor. Together, these results establish an energetic framework for TREK-2 regulation and dysfunction and provide a foundation for structure-based drug discovery targeting the K2P TREK channel family.

biophysics↗

bioRxiv2023

From head to tail - Atomistic mechanism of long-range coupling from the cytosolic sensor domain to the selectivity filter in TREK K2P channels

The two-pore domain potassium (K2P) channels TREK-1 and TREK-2 link neuronal excitability to a variety of stimuli including mechanical force, lipids, temperature and phosphorylation. This regulation involves the C-terminus as a polymodal stimulus sensor and the selectivity filter (SF) as channel gate. Using crystallographic up- and down-state structures of TREK-2 as a template for full atomistic molecular dynamics simulations, we reveal that the SF in down-state undergoes inactivation via conformational changes at the S1 ion coordination site, while the up-state structure maintains a stable and conductive SF. This provides an atomistic understanding of the low channel activity previously assigned to the down state, but not evident from the crystal structure. Furthermore, by using (de-)phosphorylation mimics and chemically attaching lipid tethers to the proximal C-terminus (pCt), we confirm the hypothesis that moving the pCt towards the membrane induces the up-state. We also uncover two gating pathways by which movement of the pCt controls the stability (i.e. conductivity) of the filter gate. Together, these findings provide atomistic insights into the SF gating mechanism and the physiological regulation of TREK channels by phosphorylation.

biophysics↗