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Biology subjects

Tsukada, A.

Publications and source records attributed to Tsukada, A..

2 recordsLinked to original sources

Standardizing image-derived fish length-frequency distributions to reference measurements using bin-specific error matrices

Artificial intelligence (AI)-based image analysis can efficiently estimate fish length, but differences in devices, imaging conditions, operators, and AI models limit comparability among surveys. We propose a standardization framework that estimates a bin-specific error matrix from paired reference measurements and AI-derived lengths and applies it to standardize (correct) AI-derived length-frequency distributions. The Richardson-Lucy expectation-maximization algorithm was used, with the number of iterations selected via cross-validation. Simulations based on empirical length-frequency data from 110 species showed that standardization reduced relative bias and distributional discrepancy; median relative-bias and root mean square error ratios were below 1, and the performance was more affected by the amount of paired data than by the number of cross-validation folds. In real data from 957 Japanese jack mackerel, standardized AI-derived distributions approached human-observer histograms, although discrepancies remained in the range of 160-230 mm. The proposed framework provides a practical approach for improving the comparability of image-derived length-frequency data using paired calibration data, without retraining the underlying AI model.

ecology↗

DDIAS is a single-stranded DNA-binding effector of the TOPBP1-CIP2A complex in mitosis

DNA double-strand breaks and unresolved DNA replication intermediates are particularly dangerous during mitosis. Paradoxically, cells inactivate canonical DNA repair mechanisms during chromosome segregation in favor of alternative pathways that depend on TOPBP1 and CIP2A, but how they function is still poorly defined. Here, we describe the identification of DDIAS as a mitosis-specific DNA damage response protein. We establish DDIAS as a phosphorylation-dependent component and effector of the TOPBP1-CIP2A complex with single-stranded DNA (ssDNA)-binding activity, and thereby delineate a ssDNA protection mechanism that safeguards chromosome integrity during mitosis, particularly in BRCA-deficient cells. We also identify biallelic inactivating mutations in DDIAS in a patient with a severe neurodevelopmental disorder. These findings highlight for the first time a potential physiological role for the DNA damage response in mitosis.

molecular biology↗