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Truong, C.

Publications and source records attributed to Truong, C..

15 recordsLinked to original sources

Impact of repetition on physical and imagined movements

Motor imagery and overt action are proposed to share common planning mechanisms while relying on distinct processes during movement performance. To investigate how repetition affects physical and imagined movements, participants physically or mentally drew paths while avoiding barriers. The barrier orientations were either repeated or different across consecutive trials, and the modality (execution or imagery) of the trials either changed or remained the same for two consecutive trials. Reaction time and movement time were analysed as measures of movement planning and task performance, respectively. Imagined movements produced longer reaction times and movement times than physical movements. Repetition of orientation reduced reaction times in both physical and imagined trials, indicating that trajectory repetition facilitated movement preparation. In contrast, previous trial type influenced reaction times only for physical movements, which were only initiated faster when preceded by another physical trial. Different effects emerged for movement time. Physical movements were faster when the same trajectory was repeated no matter the previous trial type, whereas imagined movements were unaffected by orientation and instead showed shorter durations when preceded by another imagined trial. The findings indicate that physical and imagined movements rely on more similar trajectory representations during the planning stage, but diverge during task performance. While physical movements appear to benefit from the persistence of previously generated movement trajectories, imagined trials seems more influenced by modality-specific cognitive processes. These results provide behavioural support for the Motor-Cognitive model and contribute to understanding how movement repetition influences overt and imagined actions.

neuroscience↗

Mental Timing in Locomotion: Walking Across Real and Imagined Distances

The present study aimed to directly replicate the seminal findings of Decety et al. (1989), while also extending the original work with a larger sample size and additional statistical analyses. Thirty healthy adults completed both imagined and executed walking tasks over distances of 5, 10, and 15 meters. Participants also completed the Movement Imagery Questionnaire 3 (MIQ 3). Temporal correspondence between imagined and executed walking was assessed using repeated-measures ANOVA, correlation analyses, Bayesian equivalence tests, and Bland Altman analyses. Walking duration increased significantly with distance, while no significant differences were observed between imagined and executed walking times. Bayesian equivalence tests provided evidence supporting temporal equivalence between the two modalities, and Bland Altman analyses indicated good agreement with minimal systematic bias. Strong positive correlations were found between imagined and executed durations at all distances. MIQ-3 scores were not significantly associated with differences between imagined and executed walking durations. Overall, the findings successfully replicate and extend the original results reported by Decety et al. (1989), providing additional evidence supporting temporal equivalence between motor imagery and movement execution. By combining a larger sample size with contemporary statistical approaches, the present study strengthens support for the principle of functional equivalence for highly automated and cyclic movements.

neuroscience↗

Timecourse of corticospinal excitability for observed action: evidence of early suppression followed by return to baseline without facilitation

IntroductionAction observation modulates corticospinal excitability, with most previous studies indicating an increase in excitability in the muscles involved in the observed movement. In addition, previous work suggests that modulation of corticospinal excitability could be specific to the timing of the stimulation, muscle, and direction of movement. Here we examined the influence of these factors on corticospinal excitability. MethodParticipants observed stimuli presenting a static hand, followed by an image of the endpoint of an index/little finger abduction movement. Transcranial magnetic stimulation was delivered at time points from 100-800ms after movement onset. Stimuli were presented in various orientations to study possible effects of anatomical positioning and movement direction, compared relative to the control condition of a static hand. ResultsCorticospinal excitability was lower at early timings (100-400ms), before rising to a plateau at later timings (500-800ms) which did not differ from the static hand condition. This facilitation was muscle-specific, with higher excitability for the muscle involved in the observed movement. By contrast, the relative direction of movement did not influence corticospinal excitability. DiscussionThese results replicate the time-dependent modulation of corticospinal excitability induced by action observation; however, we argue that simply interpreting such effects as an increase in excitability may be overly simplistic. In line with previous studies, we argue that the choice of control condition used during action observation studies may be critical to the overall direction of effects.

neuroscience↗

'RMT-Finder': an automated procedure to determine the Resting Motor Threshold for Transcranial Magnetic Stimulation

BackgroundTranscranial Magnetic Stimulation (TMS) studies identify the Resting Motor Threshold (RMT) to calibrate stimulation intensity. However, this procedure is time-consuming and subject to variability. We developed an automated procedure to improve the efficiency and standardization of RMT determination. New methodWe developed an algorithm that measures MEP amplitudes and automatically adjusts stimulation intensity to determine the RMT. Experiment 1 compared this automated method with the manual procedure in terms of reliability and equivalence. Experiment 2 developed a "Fast" automated process, assessing it against both the manual and initial automated procedures. ResultsAcross both experiments the automated approach demonstrated excellent test-retest reliability and strong agreement with the manual method (Intraclass Correlation Coefficients [&ge;]0.95), giving estimates of RMT statistically equivalent to those of manual measurements within {+/-}3% MSO, with the majority of comparisons within {+/-}2% MSO. Experiment 2 optimized the procedure, allowing empirical determination of the RMT in an average of <3 minutes with only 33-34 pulses. Comparison with existing methods RMT-Finder provides a reliable and time-efficient alternative to manual approaches. To the best of our knowledge RMT-Finder presents the first closed-loop feedback approach to identify the RMT without manual intervention. This procedure can improve standardization and reproducibility in TMS studies. ConclusionsAutomating RMT assessment allows rapid and highly reproducible assessment of this standard TMS measurement, making it viable for inclusion in routine clinical applications that require standardized procedures.

neuroscience↗

Motor learning under mental fatigue: the compensatory role of rest periods

Mental fatigue is known to impair cognitive and motor performance, but its impact on motor learning remains unclear. This study examined how mental fatigue affects skill acquisition in a sequential finger-tapping task. Twenty-eight participants were assigned to either a mental fatigue group, which completed a thirty-minute Stroop task, or a control group, which watched a documentary of equivalent duration. Both groups then trained on the finger-tapping task across multiple practice blocks with brief rest periods. Overall motor skill improved similarly in both groups. However, mental fatigue altered the pattern of acquisition: participants in the fatigue group showed decreased performance during practice blocks, which was compensated by larger gains during inter-block rest periods. A strong negative correlation was observed between online decrements and offline improvements, indicating that greater declines during practice were associated with larger gains during rest. This study highlights the critical role of rest periods in maintaining learning under cognitively demanding conditions and provides insight into how internal states, such as mental fatigue, can selectively influence the expression of performance without compromising overall learning.

neuroscience↗

A comprehensive, open-source battery of movement imagery ability tests: Development and psychometric properties

Imagining actions is a covert and multidimensional skill difficult to quantify. Comprehensive assessments rarely combine measures of imagery generation, maintenance, and manipulation. We developed and validated a combination of tests to assess these processes of movement imagery, online. 180 healthy individuals completed the MIQ-RS questionnaire (generation), the Imagined Finger Sequence Task (iFST; maintenance), and the Hand Laterality Judgement Task (HLJT; manipulation). MIQ-RS showed a bifactorial structure (visual and kinesthetic modalities) according to confirmatory factor analysis, and its reliability (internal consistency) was good. In the iFST, internal validity analyses via generalized mixed models showed a clear effect of sequence complexity, stronger for execution than imagery. Reliability, estimated via signal-to-noise ratios (SNRs) using hierarchical Bayesian models, was also adequate (SNR [&ge;] 1.6). In the HLJT, expected effects of rotation angle, hand view, and their interaction, consistent with biomechanical constraints, were also found. Reliability was also adequate (SNR [&ge;] 1.75). Criterion validity across tests, assessed using Bayesian Spearmans correlations, showed that correlations were generally absent (BF01 [&ge;] 3), and when present, of small magnitude (r [&le;] 0.27). Test-retest reliability (123 participants reassessed 6-8 days after), computed via Intraclass Correlation Coefficients (ICCs), was generally adequate (ICCs [&ge;] 0.67). We conclude that the online versions of these tests showed adequate structural/internal validity and (test-retest) reliability. However, weak criterion validity suggests individuals with high ability to generate movement imagery may not necessarily have high ability to maintain and/or manipulate movement imagery, underscoring the need for comprehensive assessment of this capacity.

neuroscience↗

Benchmarking fungal species classification using Oxford Nanopore Technologies long-read ITS metabarcodes

The gold standard for fungal classification has long been specimen or culture-based, however, many Fungi display simple morphological characteristics, or are unculturable by current methods. Using DNA metabarcodes, many taxa can be identified from a single sample simultaneously, but annotating these sequences with species-level taxonomy often requires more information than short-read sequences afford. Oxford Nanopore Technologies (ONT) long-read sequencing has achieved species-level resolution in metabarcoding of bacteria and invertebrates, but complex fungal taxonomy and biology has been a hurdle to the application of this technology for Fungi. In this work, we use a mock community of real ONT long-read metabarcodes from 54 fungi from the Dikarya subkingdom to extensively benchmark classification approaches to assign species-level taxonomy. We compare eight classification approaches spanning alignment and k-mer based algorithms, to emerging machine learning methods, and assess the sensitivity, precision, and diversity estimation of each classifier at the species level. Our results indicate that classifiers which determine informed thresholds of sequence similarity based on a provided reference database are not only more accurate at the species level, but more consistent to correct species abundance distributions, and better able to place sequences from unknown species taxonomically closer to their true origin. We demonstrate the power of machine learning classifiers to leverage long-read metabarcodes, and their promise as emerging methods in DNA sequence classification. We present our results in the context of real-world use cases, to demonstrate that species-level taxonomic inference is achievable, precise, and reliable with ONT long-read fungal metabarcodes.

molecular biology↗

Pervasive aggregation and depletion of host and viral proteins in response to cysteine-reactive electrophilic compounds

Protein homeostasis is tightly regulated, with damaged or misfolded proteins quickly eliminated by the proteasome and autophagosome pathways. By co-opting these processes, targeted protein degradation technologies enable pharmacological manipulation of protein abundance. Recently, cysteine-reactive molecules have been added to the degrader toolbox, which offer the benefit of unlocking the therapeutic potential of undruggable protein targets. The proteome-wide impact of these molecules remains to be fully understood and given the general reactivity of many classes of cysteine-reactive electrophiles, on- and off-target effects are likely. Using chemical proteomics, we identified a cysteine-reactive small molecule degrader of the SARS-CoV-2 non- structural protein 14 (nsp14), which effects degradation through direct modification of cysteines in both nsp14 and in host chaperones together with activation of global cell stress response pathways. We find that cysteine-reactive electrophiles increase global protein ubiquitylation, trigger proteasome activation, and result in widespread aggregation and depletion of host proteins, including components of the nuclear pore complex. Formation of stress granules was also found to be a remarkably ubiquitous cellular response to nearly all cysteine-reactive compounds and degraders. Collectively, our study sheds light on complexities of covalent target protein degradation and highlights untapped opportunities in manipulating and characterizing proteostasis processes via deciphering the cysteine-centric regulation of stress response pathways.

biochemistry↗

Speaker-induced suppression in EEG during a naturalistic reading and listening task

Speaking elicits a suppressed neural response when compared to listening to others speech, a phenomenon known as speaker-induced suppression (SIS). Previous research has focused on investigating SIS at constrained levels of linguistic representation, such as the individual phoneme and word level. Here we present scalp EEG data from a dual speech perception and production task where participants read sentences aloud then listened to playback of themselves reading those sentences. Playback was separated into predictable repetition of the previous trial and unpredictable, randomized repetition of a former trial to investigate the role predictive processing plays in SIS. Concurrent EMG was recorded to control for movement artifact during speech production. In line with previous research, event-related potential analyses at the sentence level demonstrated suppression of early auditory components of the EEG for production compared to perception. To evaluate whether specific neural representations contribute to SIS (in contrast with a global gain change), we fit linear encoding models that predicted scalp EEG based on phonological features, EMG activity, and task condition. We found that phonological features were encoded similarly between production and perception. However, this similarity was only observed when controlling for movement by using the EMG response as an additional regressor. Our results suggest SIS is at the representational level a global gain change between perception and production, not the suppression of specific characteristics of the neural response. We also detail some important considerations when analyzing EEG during continuous speech production.

neuroscience↗

Time-of-day effects on motor learning

While the time-of-day significantly impacts motor performance, its effect on motor learning has not yet been elucidated. Here, we investigated the influence of the time-of-day on skill acquisition (i.e., skill improvement immediately after a training-session) and consolidation (i.e., skill retention after a time interval). Three groups were trained at 10 a.m. (G10am), 3 p.m. (G3pm), or 8 p.m. (G8pm) on a finger-tapping task. We recorded the skill (i.e. the ratio between movement duration and accuracy), before and immediately after the training to evaluate skill acquisition, and after 24 hours, to measure skill consolidation. We did not observe any difference in acquisition according to the time of the day. However, we found an improvement in performance 24 hours after the evening training (G8pm) while the morning (G10am) and the afternoon (G3pm) groups deteriorated and stabilized their performance, respectively. Furthermore, two control experiments (G8wake and G8sleep) supported the idea that a night of sleep contributes to the skill consolidation of the evening group. These results show an influence of time-of-day on the consolidation process, with better consolidation when the training is carried out in the evening. This finding may have an important impact on the planning of training programs in sports, clinical, or experimental domains.

neuroscience↗

Skin stem cells orchestrate de novo generation of extrathymic regulatory T cells to establish a temporary protective niche during wound healing

Adult stem cells reside in various tissues to govern homeostasis and repair damage. During wound healing, these stem cells must be mobilized to enter the center of the injury where they are exposed to many inflammatory immune cells infiltrating the wounded tissue. While these immune cells are indispensable for preventing infections and clearing dead cells, they can also create a harsh inflammatory environment which could potentially damage the stem cells and prevent their self-renewal and differentiation. Here, using a model of cutaneous wound healing in which hair follicle stem cells (HFSCs) repair the wound, we show that, upon migrating into the wound, skin stem cells acquire a strong immune modulatory capacity which allows them to sculpt a temporary immune suppressive niche for self-protection. We reveal that the HFSCs in the wound bed orchestrate extrathymic differentiation of regulatory T (Treg) cells by providing co-stimulation to the woundinfiltrating CD4 effector T cells. In this way, Treg cells can be generated de novo in close proximity to and can intimately protect HFSCs from the collateral damage inflicted by inflammatory neutrophils. This study uncovered a striking inflammatory adaptation capacity unique to adult tissue stem cells which allows them to shape their own immune suppressive niche during wound repair.

immunology↗

CK2 inhibits TIMELESS nuclear export and modulates CLOCK transcriptional activity to regulate circadian rhythms

Circadian clocks orchestrate daily rhythms in organismal physiology and behavior to promote optimal performance and fitness. In Drosophila, key pacemaker proteins PERIOD (PER) and TIMELESS (TIM) are progressively phosphorylated to perform phase-specific functions. Whereas PER phosphorylation has been extensively studied, systematic analysis of site-specific TIM phosphorylation is lacking. Here, we identified phosphorylation sites of PER-bound TIM by mass spectrometry, given the importance of TIM as a modulator of PER function in the oscillator. Among the twelve TIM phosphorylation sites we identified, at least two of them are critical for circadian timekeeping as mutants expressing non-phosphorylatable mutations exhibit altered behavioral rhythms. In particular, we observed that CK2-dependent phosphorylation of TIM(S1404) promotes nuclear accumulation of PER-TIM heterodimers by inhibiting the interaction of TIM and nuclear export component, Exportin 1 (XPO1). We postulate that proper level of nuclear PER-TIM accumulation is necessary to facilitate kinase recruitment for the regulation of daily phosphorylation rhythm and phase-specific transcriptional activity of CLOCK (CLK). Our results highlight the contribution of phosphorylation-dependent nuclear export of PER-TIM heterodimers to the maintenance of circadian periodicity and identify a new mechanism by which the negative elements of the circadian oscillator (PER-TIM) regulate the positive elements (CLK-CYC). Finally, since the molecular phenotype of tim(S1404A) non-phosphorylatable mutant exhibits remarkable similarity to that of a mutation in human timeless that underlies Familial Advanced Sleep Phase Syndrome (FASPS), our results revealed an unexpected parallel between the functions of Drosophila and human TIM and may provide new insights into the molecular mechanisms underlying human FASPS. Significance StatementPhosphorylation is a central mechanism important for the regulation of circadian physiology across organisms. The molecular oscillator is composed of pacemaker proteins that undergo elaborate phosphorylation programs to regulate phase-specific functions. In Drosophila, phosphorylation of TIMELESS (TIM) has been recognized as critical for its function in the oscillator, but a systematic analysis of TIM phosphorylation is lacking. Here, we identified twelve Drosophila TIM phosphorylation sites by mass spectrometry and showed that phosphorylation at TIM(S1404) is necessary for maintaining 24-hour rhythms. Finally, since the molecular phenotype of tim(S1404A) non-phosphorylatable fly mutant exhibits remarkable similarity to that of a mutation in human timeless that underlies FASPS, our results may provide new insights into the molecular underpinnings of human FASPS.

neuroscience↗

Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana

In Arabidopsis, successful pollen-stigma interactions are dependent on rapid recognition of compatible pollen by the stigmatic papillae located on the surface of the pistil and the subsequent regulation of pollen hydration and germination, and followed by the growth of pollen tubes through the stigma surface. Here we have described the function of a novel gene, E6-like 1 (E6L1), that was identified through the analysis of transcriptome datasets, as one of highest-expressed genes in the stigma, and furthermore, its expression was largely restricted to the stigma and trichomes. The first E6 gene was initially identified as a highly-expressed gene during cotton fiber development, and related E6-like predicted proteins are found throughout the Angiosperms. To date, no orthologous genes have been assigned a biological function. Both the Arabidopsis E6L1 and cotton E6 proteins are predicted to be secreted, and this was confirmed using an E6L1:RFP fusion construct. To further investigate E6L1s function, one T-DNA and two independent CRISPR-generated mutants were analyzed for compatible pollen-stigma interactions, and pollen hydration, pollen adhesion and seed set were mildly impaired for the e6l1 mutants. This work identifies E6L1 as a novel stigmatic factor that plays a role during the early post-pollination stages in Arabidopsis.\n\nKey MessageWe describe a function for a novel Arabidopsis gene, E6-like 1 (E6L1), that was identified as a highly-expressed gene in the stigma and plays a role in early post-pollination stages.

plant biology↗

Liquid biopsy for infectious diseases: Sequencing of cell-free plasma to detect pathogen DNA in patients with invasive fungal disease

Diagnosis of life-threatening deep-seated infections currently requires invasive sampling of the infected tissue to provide a microbiologic diagnosis. These procedures can lead to high morbidity in patients and add to healthcare costs. Here we describe a novel next-generation sequencing assay that was used to detect pathogen-derived cell-free DNA in peripheral blood of patients with biopsy-proven invasive fungal infections. The non-invasive nature of this approach could provide rapid, actionable treatment information for invasive fungal infections when a biopsy is not possible.

microbiology↗

Diverse Mechanisms of Resistance in Carbapenem-Resistant Enterobacteriaceae at a Health Care System in Silicon Valley, California

Carbapenem-resistant Enterobacteriaceae (CRE) are emerging as a major health threat in North America. The mechanism of resistance to carbapenems has therapeutic and public health implications. We comprehensively characterized the underlying mechanisms of carbapenem resistance in CRE isolates recovered between 2013 and 2016 at a health system in Northern California. Genotypic methods were used to detect carbapenemases and plasmid-encoded cephalosporinases, and mass spectrometry was used to quantify relative porin levels for OmpC and OmpF and their analogs. MICs for imipenem-relebactam, meropenem-vaborbactam, ceftazidime-avibactam, and ceftolozane-tazobactam were measured. Whole genome sequencing was used for strain typing. A carbapenemase gene encoding blaOXA-48 like, blaNDM, blaKPC, blaSME, blaIMP, and blaVIM was detected in 38.7% (24/62) of CRE isolates. Porin levels was down at least 2-fold in 91.9% (57/62) of isolates. Including carbapenemase genes and porin loss, the mechanism of resistance was identified in 95.2% (59/62) of CRE isolates. Of the carbapenemase gene-positive isolates, blaKPC -positive isolates were 100% susceptible to ceftazidime-avibactam, meropenem-vaborbactam, and imipenem-relebactam; blaOXA-48 like-positive isolates were 100% susceptible to ceftazidime-avibactam; and blaSME-positive isolates were 100% susceptible to meropenem-vaborbactam and ceftolozane-tazobactam. 100% (38/38), 92.1% (35/38), 89.5% (34/38), and 31.6% (12/38) of carbapenemase gene-negative CRE isolates were susceptible to ceftazidime-avibactam, meropenem-vaborbactam, imipenem-relebactam, and ceftolozane-tazobactam, respectively. None of the CRE strains were genetically identical. In conclusion, at this health system in Silicon Valley, carbapenemase-producing CRE occurred sporadically and were mediated by diverse mechanisms. Nucleic acid testing for blaOXA-48 like, blaNDM, blaKPC, blaIMP, and blaVIM was sufficient to distinguish between carbapenemase-producing and non-producing CRE and accurately predicted susceptibility to ceftazidime-avibactam, meropenem-vaborbactam and imipenem-relebactam.

microbiology↗