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Tripathi, B. K.

Publications and source records attributed to Tripathi, B. K..

3 recordsLinked to original sources

Interplay of Spoonbill, Larp7 and survival motor neuron, in Drosophila model of Spinocerebellar Ataxia 8 non-coding RNA associated neurodegeneration

A deeper understanding of neurodegenerative disorders at the level of genetic or environmental risk factors as well as contributing genes, pathways, and networks suggests the presence of shared molecular mechanisms. Previously, we have reported that the KH domain of the Spoonbill protein alone can suppress non-coding Spinocerebellar Ataxia 8 (SCA8) associated neurodegeneration. In the current study, we have identified dLarp7 as a novel interacting partner of Spoonbill in Drosophila. Mammalian Larp7 is associated with a neurodevelopmental disorder, Alazami Syndrome (AS). In this study, we report that dLarp7 protein is recruited into the pathogenic SCA8 RNA foci, which leads to depletion of its downstream target, 7SKsnRNA. Soaking away of Larp7 into toxic RNA foci results in its depletion from the physiological pool resulting in destabilization and depletion of 7SKsnRNP. Hence, increasing the dose of dLarp7 suppressed SCA8 associated neurodegeneration, by restoring the physiological levels of dLarp7 and 7SKsnRNP. In addition, it was observed that dLarp7 interacts with the somatic motor neuron (SMN) protein which is associated with spinal muscular atrophy (SMA). This observation led us to explore the interaction of Drosophila SMN1 orthologue with pathogenic SCA8 associated neurodegeneration. Intriguingly, SMN protein modulated molecular neuropathogenesis associated with SCA8. The presence of orthologues of Drosophila RNA binding proteins, dLarp7 and SMN, with mammalian counterparts underlines the translational importance of our findings. Our study also hints at the shared molecular mechanisms that underlies multiple neurodegenerative diseases. A novel association of Drosophila homologs of AS-linked Larp7 and SMA-causing SMN1 with SCA8 associated neurodegeneration suggests an overlap of molecular threads underlying the pathogenesis of neurodegenerative disorders.

neuroscience↗

Contributions of the Dachsous intracellular domain to Dachsous-Fat signaling

The protocadherins Fat and Dachsous regulate organ growth, shape, patterning, and planar cell polarity. Although Dachsous and Fat have been described as ligand and receptor, respectively, in a signal transduction pathway, there is also evidence for bidirectional signaling. Here we assess signaling downstream of Dachsous through analysis of its intracellular domain. Genomic deletions of conserved sequences within dachsous identified regions of the intracellular domain required for normal development. Deletion of the A motif increased Dachsous protein levels and decreased wing size. Deletion of the D motif decreased Dachsous levels at cell membranes, increased wing size, and disrupted wing, leg and hindgut patterning and planar cell polarity. Co-immunoprecipitation experiments established that the D motif is necessary and sufficient for association of Dachsous with four key partners: Lowfat, Dachs, Spiny-legs, and MyoID. Subdivision of the D motif identified distinct regions that are preferentially responsible for association with Lft versus Dachs. Our results identify motifs that are essential for Dachsous function and are consistent with the hypothesis that the key function of Dachsous is regulation of Fat.

developmental biology↗

cProSite: A web based interactive platform for online proteomics, phosphoproteomics, and genomics data analysis

We developed cProSite, a website that provides online genomics, proteomics, and phosphoproteomics analysis for the data of The National Cancer Institutes Clinical Proteomic Tumor Analysis Consortium (CPTAC). This tool focuses on comparisons and correlations between different proteins and mRNAs of tumors and normal tissues. Our website is designed with biologists and clinicians in mind, with a user-friendly environment and fast search engine. The search results of cProSite can be used for clinical data validation and provide useful strategic information to identify drug targets at proteomic, phosphoproteomic, or genomic levels. The site is available at http://cprosite.ccr.cancer.gov. SignificanceAn interactive database for the expression and correlation for proteins, proteomic phosphorylations, and mRNA levels has been developed for analyzing the molecular alterations between tumors and normal tissues of various tumor types.

bioinformatics↗