Biology subjects

Trinh, A.-T.

Publications and source records attributed to Trinh, A.-T..

5 recordsLinked to original sources

bioRxiv2025

Hierarchical processing of sensory information across topographically organized thalamocortical-like circuits in the zebrafish brain

Thalamocortical projections contribute to the spatial organization and functional hierarchies of the mammalian cortex. Primary sensory cortices receive topographically segregated information from first-order thalamic nuclei, which process distinct sensory modalities. In contrast, higher-order cortical regions integrate information from multiple information channels. While such hierarchical processing and integration of information is the foundation for neural computations in the mammalian cortex, the fundamental principles of thalamocortical computations in non-mammalian vertebrates remains unexplored. The zebrafish pallium, located in the dorsal telencephalon, is regarded as the homolog of the mammalian cortex. However, it remains unclear how the zebrafish pallium receives and processes sensory information, and how the architecture and function of these processes compare to the thalamocortical circuits in other vertebrates. Using anatomical tracing, electrophysiological circuit mapping, and in vivo Ca2+ imaging, we revealed a thalamocortical-like pathway in the zebrafish brain. We found that the preglomerular nucleus (PG) is the primary source of visual and mechano-vibrational information to the zebrafish pallium. We demonstrated that PG neurons and their pallial projections exhibit sensory-specific and topographically organized responses. In contrast, the sensory responses of pallial neurons display multiple layers of topographically organized hierarchies, ranging from simple sensory-specific responses to multimodal and coincidence-detecting nonlinear responses. Notably, we observed a progressive increase in the complexity of sensory computations, which is organized topographically along the posterior-anterior axis of the zebrafish pallium. Collectively, our results suggest that hierarchical sensory processing across topographically organized pallial regions is a conserved functional feature of the vertebrate pallium.

neuroscience↗

bioRxiv2025

Topographically organized dorsal raphe activity modulates forebrain sensory-motor computations and adaptive behaviors.

The dorsal raphe nucleus (DRN) plays an important role in shaping a wide range of behaviors, including mood, motivation, appetite, sleep, and social interactions. Reflecting these diverse roles, the DRN is composed of molecularly distinct and topographically organized groups of neurons that target specific regions of the forebrain. Despite these insights, fundamental questions remain regarding how DRN neurons process sensory information, what do DRN communicate to forebrain, and the role of DRN inputs in forebrain computations and animal behavior. To address these questions, we investigated the spatiotemporal activity patterns of DRN neurons, along with DRN axons and their targets in the juvenile zebrafish forebrain. Our findings revealed a remarkable topographic organization of ongoing activity and sensory-motor responses within the DRN. We discovered that a large fraction of DRN neurons are primarily driven by animals locomotor activity. We also observed that an anterior group of DRN neurons, marked by Gad1, exhibited distinct activity patterns during rest, locomotor activity and sensory stimulation. DRN axons broadly innervating the forebrain exhibit topographically organized excitation and inhibition in response to sensory stimulation and motor activity. Notably, we observed significant and rapid covariation between the activity of DRN axons and nearby forebrain neurons. Chemogenetic ablation of the DRN led to a marked reduction in the synchrony and sensory-motor responses across forebrain neurons, accompanied by significant deficits in adaptive behaviors. Collectively, our findings revealed the functional diversity of DRN neurons and their role in transmitting sensory and locomotor signals via topographically organized projections, which can regulate forebrain activity and play a crucial role in modulating animal behavior.

neuroscience↗

bioRxiv2023

Loss of cilia after neurulation impacts brain development and neuronal activity in larval zebrafish

Cilia are slender, hair-like structures extending from cell surfaces and playing essential roles in diverse physiological processes. Within the nervous system, primary cilia contribute to signaling and sensory perception, while motile cilia facilitate cerebrospinal fluid flow. Here, we investigated the impact of ciliary loss on neural circuit development using a zebrafish line displaying ciliogenesis defects. We found that cilia loss after neurulation affects neurogenesis and brain morphology, and lead to altered gene expression profiles. Using whole brain calcium imaging, we measured reduced light-evoked and spontaneous neuronal activity in all brain regions. By shedding light on the intricate role of cilia in neural circuit formation and function in the zebrafish, our work highlights their evolutionary conserved role in the brain and set the stage for future analysis of ciliopathy models.

neuroscience↗

bioRxiv2022

Dentate gyrus mossy cells exhibit sparse coding via adaptive spike threshold dynamics

Hilar mossy cells (hMCs) are glutamatergic neurons in the dentate gyrus (DG) that receive inputs primarily from DG granule cells (GCs), CA3 pyramidal cells and local inhibitory interneurons. The hMCs then provide direct excitatory and disynaptic inhibitory feedback input to GCs. Behavioral and in vivo single unit recording experiments have implicated hMCs in pattern separation as well as is in spatial navigation and learning. It has, however, been difficult to mechanistically link the in vivo physiological behavior of hMCs with their intrinsic excitability properties that convert their synaptic inputs into spiking output. Here, we carried out electrophysiological recordings from the main cell types in the DG and found that hMCs displayed a highly adaptive threshold acting over a remarkably protracted time-scale. The hMC spike threshold increased linearly with increasing current stimulation and saturated at high current intensities. This threshold also increased in response to spiking and this effect also decayed over a long timescale, allowing for activity-dependent summation that limited hMC firing rates. This mechanism operates in parallel with a prominent medium after-hyperpolarizing potential (AHP) generated by the small conductance K+ channel. Based on experimentally derived parameters, we developed a phenomenological exponential integrate-and-fire model that closely mimics the hMC adaptive threshold. This lightweight model is amenable to its incorporation into large network models of the DG that will be conducive to deepen our understanding of the neural bases of pattern separation, spatial learning and navigation in the hippocampus. Statement of significanceRecent studies on hilar mossy cells have revealed that they are implicated in spatial navigation and mnemonic functions. Yet, the basic intrinsic characterization of these hMCs is still too superficial to explain their spiking behavior in vivo. Here, we describe novel biophysical properties of hMCs, including an independent relationship between spike latency and spike threshold as well as a slowly adapting spike threshold. These findings complement several other biophysical and connectivity similarities between hMCs and CA3 pyramidal cells, while emphasizing the contrast with hilar interneurons. Additionally, our results are well captured by a phenomenological model of the hMC which provides a useful framework to study the neural substrate of spatial navigation and learning in the dentate gyrus.

neuroscience↗

bioRxiv2019

Cellular and network mechanisms may generate sparse coding of sequential object encounters in hippocampal-like circuits

In mammals, the localization of distinct landmarks is performed by hippocampal neurons that sparsely encode an animals location relative to surrounding objects. Similarly, the dorsal lateral pallium (DL) is essential for spatial learning in teleost fish. The DL of weakly electric gymnotiform fish receives sensory inputs from the preglomerular nucleus (PG), which has been hypothesized to encode the temporal sequence of electrosensory or visual landmark/food encounters. Here, we show that DL neurons have a hyperpolarized resting membrane potential combined with a high and dynamic spike threshold that increases following each spike. Current-evoked spikes in DL cells are followed by a strong small-conductance calcium-activated potassium channel (SK) mediated after-hyperpolarizing potential (AHP). Together, these properties prevent high frequency and continuous spiking. The resulting sparseness of discharge and dynamic threshold suggest that DL neurons meet theoretical requirements for generating spatial memory engrams by decoding the landmark/food encounter sequences encoded by PG neurons.

neuroscience↗