Biology subjects

Tribelli, P. M.

Publications and source records attributed to Tribelli, P. M..

4 recordsLinked to original sources

bioRxiv2025

Genetic dissection of cyclic di-GMP signaling in Pseudomonas aeruginosa via diguanylate cyclase disruption

The second messenger bis-(3'[->]5')-cyclic dimeric guanosine monophosphate (c-di-GMP) governs adaptive responses in the opportunistic pathogen Pseudomonas aeruginosa, including biofilm formation and the transition from acute to chronic infections. Understanding the intricate c-di-GMP signaling network remains challenging due to the overlapping activities of numerous diguanylate cyclases (DGCs). In this study, we employed a CRISPR-based multiplex genome-editing tool to disrupt all 32 GGDEF domain-containing proteins (GCPs) implicated in c-di-GMP signaling in P. aeruginosa UCBPP-PA14. Phenotypic and physiological analyses revealed that the resulting mutant was unable to form biofilms and had attenuated virulence. Residual c-di-GMP levels were still detected despite the extensive GCP disruption, underscoring the robustness of this regulatory network. Taken together, these findings provide insights into the complex c-di-GMP metabolism and showcase the importance of functional overlapping in bacterial signaling. Moreover, our design overcomes the native redundancy in c-di-GMP synthesis, providing a framework to dissect individual DGC functions and paving the way for targeted strategies to address bacterial adaptation and pathogenesis.

microbiology↗

bioRxiv2024

BEYOND UNIFORMITY: Pyomelanin,s structural complexity impacts on UV shielding in Pseudomonas species with different lifestyles.

Melanin, a polymeric pigment synthesized by various organisms, confers advantageous traits, including heightened resistance to stress agents. In Pseudomonas, disruption of the tyrosine degradation pathway leads to pyomelanin production. Despite a shared synthetic pathway, the chemical structure of pyomelanin remains elusive due to its heterogeneous polymeric nature, suggesting composition variations even among closely related species. Our objective was to analyze pyomelanin structural features across Pseudomonas strains: CRISPR/nCas9-engineered hmgA mutants of PAO1 and PA14, reference strains of the human opportunist pathogen P. aeruginosa; a natural melanogenic mutant (PAM) from a patient; and a Tn5 mutant of the extremophile bacterium P. extremaustralis (PexM). Structural analysis revealed strain-specific differences. UV spectra exhibited dual peaks for PAO1 and PA14 mutants, while PAM and PexM displayed a single peak. FTIR indicated changes in the alcohol content ratio, with PAO1 and PA14 hmgA mutants having a near 1:1 ratio, PexM a dominant phenol band, and PAM a predominance of the alcohol band. Complex NMR spectra suggested non-linear polymers composed by substituted phenolic rings, carboxylic acids, and alkyl chains, highlighting inter-pigment disparities. UVC (254 nm) susceptibility assessment showed increased survival with pyomelanin addition, correlating with the attenuation of the incoming radiation due to absorption in the culture medium. Moreover, survival to UVC of P. extremaustralis was different depending on the melanin source being the most protective pyomelanin obtained from PAO1. These findings reveal distinct pyomelanin subgroups based on structure among strains, elucidating varied physiological effects.

microbiology↗

bioRxiv2023

Nitrosative stress under microaerobic conditions triggers inositol metabolism in Pseudomonas extremaustralis

Bacteria are exposed to reactive oxygen and nitrogen species that provoke oxidative and nitrosative stress which can lead to macromolecule damage. Coping with stress conditions involves the adjustment of cellular responses, which helps address metabolic challenges. In this study, we performed a global transcriptomic analysis of the response of Pseudomonas extremaustralis to nitrosative stress, induced by S-nitrosoglutathione (GSNO), a nitric oxide donor, under microaerobic conditions. The analysis revealed the upregulation of genes associated with inositol catabolism; a compound widely distributed in nature whose metabolism in bacteria has aroused interest. The RNA-seq data also showed heightened expression of genes involved in essential cellular processes like transcription, translation, amino acid transport and biosynthesis, as well as in stress resistance including iron-dependent superoxide dismutase, alkyl hydroperoxide reductase, thioredoxin, and glutathione S-transferase in response to GSNO. Furthermore, GSNO exposure differentially affected the expression of genes encoding nitrosylation target proteins, encompassing metalloproteins and proteins with free cysteine and /or tyrosine residues. Notably, genes associated with iron metabolism, such as pyoverdine synthesis and iron transporter genes, showed activation in the presence of GSNO, likely as response to enhanced protein turnover. Physiological assays demonstrated that P. extremaustralis can utilize inositol proficiently under both aerobic and microaerobic conditions, achieving growth comparable to glucose-supplemented cultures. Moreover, supplementing the culture medium with inositol enhances the stress tolerance of P. extremaustralis against combined oxidative-nitrosative stress. Concordant with the heightened expression of pyoverdine genes under nitrosative stress, elevated pyoverdine production was observed when myo-inositol was added to the culture medium. These findings highlight the influence of nitrosative stress on proteins susceptible to nitrosylation and iron metabolism. Furthermore, the activation of myo-inositol catabolism emerges as a protective mechanism against nitrosative stress, shedding light on this pathway in bacterial systems, and holding significance in the adaptation to unfavorable conditions.

microbiology↗

bioRxiv2023

Fever like temperature impacts on Staphylococcus aureus and Pseudomonas aeruginosa interaction, physiology, and virulence both in vitro and in vivo

BackgroundStaphylococcus aureus and Pseudomonas aeruginosa cause a wide variety of bacterial infections and coinfections, showing a complex interaction that involves the production of different metabolites and metabolic changes. Temperature is a key factor for bacterial survival and virulence and within the host, bacteria could be exposed to an increment in temperature during fever development. We analyzed the previously unexplored effect of fever-like temperatures (39{degrees}C) on S. aureus USA300 and P. aeruginosa PAO1 microaerobic mono- and co-cultures compared with 37{degrees}C, by using RNAseq and physiological assays including in-vivo experiments. ResultsIn general terms both temperature and co-culturing had a strong impact on both PA and SA with the exception of the temperature response of monocultured PA. We studied metabolic and virulence changes on both species. Altered metabolic features at 39{degrees}C included arginine biosynthesis and the periplasmic glucose oxidation in S. aureus and P. aeruginosa monocultures respectively. When PA co-cultures were exposed at 39{degrees}C they upregulated ethanol oxidation related genes along with an increment in organic acid accumulation. Regarding virulence factors, monocultured SA showed an increase in the mRNA expression of the agr operon and hld, pms and pms{beta} genes at 39{degrees}C. Supported by mRNA data, we performed physiological experiments and detected and increment in hemolysis, staphylxantin production and a decrease in biofilm formation at 39{degrees}C. On the side of PA monocultures, we observed increase in extracellular lipase and protease and biofilm formation at 39{degrees}C along with a decrease in motility in correlation with changes observed at mRNA abundance. Additionally, we assessed host-pathogen interaction both in-vitro and in-vivo. S. aureus monocultured at 39{degrees}C showed a decrease in cellular invasion and an increase in IL-8 -but not in IL-6- production by A549 cell line. PA also decreased its cellular invasion when monocultured at 39{degrees}C and did not induce any change in IL-8 or IL-6 production. PA strongly increased cellular invasion when co-cultured at 37{degrees}C and 39{degrees}C. Finally, we observed increased lethality in mice intranasally inoculated with S. aureus monocultures pre-incubated at 39{degrees}C and even higher levels when inoculated with co-cultures. The bacterial burden for P. aeruginosa was higher in liver when the mice were infected with co-cultures previously incubated at 39{degrees}C comparing with 37{degrees}C. ConclusionOur results highlight a relevant change in the virulence of bacterial opportunistic pathogens exposed to fever-like temperatures in presence of competitors, opening new questions related to bacteria-bacteria and host-pathogen interactions and coevolution.

microbiology↗