Biology subjects

Tremblay, N.

Publications and source records attributed to Tremblay, N..

3 recordsLinked to original sources

bioRxiv2025

Cellular porosity in dentin exhibits complex network characteristics with spatio-temporal fluctuations

According to the current hydrodynamic theory, teeth sensitivity is mediated by odontoblast cell processes which can be activated by fluid flow in the pericellular space of bulk dentin. To better understand the possible spatial extent of such phenomena, we investigated the topology and connectivity of dentinal porosity of a healthy human tooth. Using confocal fluorescence microscopy, we modeled the porosity as a spatial graph with edges representing dentinal tubules or lateral branches and nodes defining their connections. A large fraction of porosity channels in crown dentin was found to be interconnected, with 47 % of nodes linked in a single component over a millimetric distance from the dentin-enamel junction (DEJ). However, significant differences in network topology were also observed. A sharp transition in connectivity from 83 % to 43 % occurred at 300 {micro}m from the DEJ, which corresponds to an early stage of tooth formation. This was reflected in all graph metrics investigated, in particular the network resilience which dropped by a factor 2. To test the robustness of our observations, an in-depth analysis of potential remaining biases of the graph extraction was conducted. Most graph metrics considered were found to be within a 10 % precision range from a manually annotated ground truth. However, path metrics, which characterize transport properties, proved very sensitive to network defects. Residual errors were classified in 4 topological classes related to fluorescence staining and confocal detection efficiency, instrumental resolution and image processing. Their relative importance was estimated using statistical and physical graph attack simulations in a broad experimental range. Our modeling thus provides a practical framework to estimate the interpretability of calculated graph metrics for a given experimental microscopy setup and image processing pipeline. Overall, this study shows that dentin porosity exhibits typical characteristics of a complex network and quantitatively emphasize the importance of the smallest lateral branches. Our results could be used to model fluid flow more accurately in order to better understand mechanosensing by odontoblasts in dentin.

biophysics↗

bioRxiv2023

Flaviviruses alter endoplasmic reticulum-mitochondria contacts to regulate respiration and apoptosis

With no therapeutics available, there is an urgent need to better understand the pathogenesis of flaviviruses which constitute a threat to public health worldwide. During infection, dengue virus (DENV) and Zika virus (ZIKV), two flaviviruses induce alterations of mitochondria morphology to favor viral replication, suggesting a viral co-opting of mitochondria functions. Here, we performed an extensive transmission electron microscopy-based quantitative analysis to demonstrate that both DENV and ZIKV alter endoplasmic reticulum-mitochondria contacts (ERMC). This correlated at the molecular level with an impairment of ERMC tethering protein complexes located at the surface of both organelles. Furthermore, virus infection, as well as NS4B expression modulated the mitochondrial oxygen consumption rate. Consistently, metabolomic and mitoproteomic analyses revealed a decrease in the abundance of several metabolites of the Krebs cycle and changes in the stoichiometry of the electron transport chain. Most importantly, ERMC destabilization by protein knockdown increased virus replication while dampening ZIKV-induced apoptosis. Overall, our results support the notion that flaviviruses hijack ERMCs to generate a cytoplasmic environment beneficial for sustained and efficient replication.

microbiology↗

bioRxiv2018

Sexual maturation and embryonic development in octopus: use of energy and antioxidant defense mechanisms using Octopus mimus as a model.

Sexual maturation and reproduction influence the status of a number of physiological processes and consequently the ecology and behaviour of cephalopods. Using Octopus mimus as model species, the present study examined the changes in biochemical composition that take place during gonadal maturation of octopus females and its consequences in embryo and hatchlings characteristics, including energetic metabolites, digestive enzymes and antioxidant defence mechanisms. A total of 32 Octopus mimus adult females were sampled during ovarian maturation; biochemical composition (metabolites and digestive enzymes) of digestive gland (DG) and ovaries (only metabolites) were followed during physiological and functional maturation. Levels of protein (Prot), triacyl glycerol (TG), cholesterol (Chol), glucose (Glu) and glycogen (Gly) were evaluated. The activity of alkaline and acidic enzymes also was measured in DG. Simultaneously, groups of eggs coming from mature females were sampled along development, and metabolites (Prot, TG, Glu, Gly, TG, Chol), digestive enzymes activity (Lipases, alkaline and acidic), antioxidant defence mechanisms and radical oxygen species (ROS) were evaluated. This study shows that ovarium is a site for reserve of some nutrients for reproduction. Presumably, TG where stored at the beginning of the maturation processes followed by Chol, both at the same time were energetically supported by Glu, derived from Gly following gluconeogenic pathways. Nutrients and enzymes (metabolic, digestive and REDOX system) where maintained without significant changes and in a low activity during organogenesis. Our findings suggest that activity was not energetically costly; in contrast, during the embryo growth there was mobilization of nutrients and activation of the metabolic and digestive enzymes. Increments in consumption of yolk and glycogen, and reduction in molecules associated with oxidative stress allowed paralarvae to hatch with the antioxidant defence mechanisms ready to support ROS production.

physiology↗