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Tong, S.

Publications and source records attributed to Tong, S..

21 records · Page 2Linked to original sources

Rapid, sensitive, full genome sequencing of Severe Acute Respiratory Syndrome Virus Coronavirus 2 (SARS-CoV-2)

SARS-CoV-2 recently emerged, resulting a global pandemic. Rapid genomic information is critical to understanding transmission and pathogenesis. Here, we describe validated protocols for generating high-quality full-length genomes from primary samples. The first employs multiplex RT-PCR followed by MinION or MiSeq sequencing. The second uses singleplex, nested RT-PCR and Sanger sequencing.

genomics↗

A general model to explain repeated turnovers of sex determination in the Salicaceae

Dioecy, the presence of separate sexes on distinct individuals, has evolved repeatedly in multiple plant lineages. However, the specific mechanisms through which sex systems evolve and their commonalities among plant species remain poorly understood. With both XY and ZW sex systems, the family Salicaceae provides a system to uncover the evolutionary forces driving sex chromosome turnovers. In this study, we performed a genome-wide association study to characterize sex determination in two Populus species, P. euphratica and P. alba. Our results reveal an XY system of sex determination on chromosome 14 of P. euphratica, and a ZW system on chromosome 19 of P. alba. We further assembled the corresponding sex determination regions, and found that their sex chromosome turnovers may be driven by the repeated translocations of a Helitron-like transposon. During the translocation, this factor may have captured partial or intact sequences that are orthologous to a type-A cytokinin response regulator gene. Based on results from this and other recently published studies, we hypothesize that this gene may act as a master regulator of sex determination for the entire family. We propose a general model to explain how the XY and ZW sex systems in this family can be determined by the same RR gene. Our study provides new insights into the diversification of incipient sex chromosome in flowering plants by showing how transposition and rearrangement of a single gene can control sex in both XY and ZW systems.

genomics↗

Decoding Attention Control and Selection in Visual Spatial Attention

Event-related potentials (ERPs) are used extensively to investigate the neural mechanisms of attention control and selection. The commonly applied univariate ERP approach, however, has left important questions inadequately answered. Here, we addressed two questions by applying multivariate pattern classification to multichannel ERPs in two spatial-cueing experiments (N = 56 in total): (1) impact of cueing strategies (instructional vs. probabilistic) and (2) neural and behavioral effects of individual differences. Following the cue onset, the decoding accuracy (cue left vs. cue right) began to rise above chance level earlier and remained higher in instructional cueing ([~]80 ms) than in probabilistic cueing ([~]160 ms), suggesting that unilateral attention focus leads to earlier and more distinct formation of the attentional set. A similar temporal sequence was also found for target-related processing (cued targets vs. uncued targets), suggesting earlier and stronger attention selection under instructional cueing. Across the two experiments, individuals with higher decoding accuracy during [~]460-660 ms post-cue showed higher magnitude of attentional modulation of target-evoked N1 amplitude, suggesting that better formation of anticipatory attentional state leads to better target processing. During target processing, individual difference in decoding accuracy was positively associated with behavioral performance (reaction time), suggesting that stronger selection of task-relevant information leads to better behavioral performance. Taken together, multichannel ERPs combined with machine learning decoding yields new insights into attention control and selection that are not possible with the univariate ERP approach, and along with the univariate ERP approach, provides a more comprehensive methodology to the study of visual spatial attention.

neuroscience↗