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Tomita, K.

Publications and source records attributed to Tomita, K..

2 recordsLinked to original sources

Emergence of a novel interaction between brown bear and cicada due to anthropogenic habitat modification

Novel species interactions have generally emerged in ecosystems that are highly modified by human activities. Anthropogenic habitat modification, such as afforestation, is one possible driver of novel species interactions; however, empirical evidence remains scarce. In this study, we show that a novel predator-prey interaction between the brown bear (Ursus arctos) and nymphs of a cicada species (Lyristes bihamatus) is generated by anthropogenic habitat modification. We evaluated the frequency of brown bear predation on cicada nymphs and the density of cicada nymphs between natural forests and plantations, which are a typical type of human-modified habitat. We found that brown bear predation on cicada nymphs occurred only in the plantations. The density of cicada nymphs in the plantations was significantly higher than in the natural forest. Our results indicate that the plantation leads to the emergence of the bear-cicada interaction due to increasing the density of cicada nymphs. The study draws attention to the overlooked effects of anthropogenic habitat modification on species interactions.

ecology

The tRNA pseudouridine synthase TruB1 regulates the maturation and function of let-7 miRNA

Let-7 is an evolutionary conserved microRNA that mediates post-transcriptional gene silencing to regulate a wide range of biological processes, including development, differentiation, and tumor suppression. Let-7 biogenesis is tightly regulated by several RNA-binding proteins, including Lin28A/B, which represses let-7 maturation. To identify new regulators of let-7, we devised a cell-based functional screen of RNA-binding proteins using a let-7 sensor luciferase reporter, and identified the tRNA pseudouridine synthase, TruB1. TruB1 enhanced maturation specifically of let-7 family members. Rather than inducing pseudouridylation of the miRNAs, HITS-CLIP (High throughput sequencing crosslinking immunoprecipitation) and biochemical analyses revealed direct binding between endogenous TruB1 and the stem-loop structure of pri-let-7, which also binds Lin28A/B. TruB1 selectively enhanced the interaction between pri-let-7 and the microprocessor DGCR-8, which mediates miRNA maturation. Finally, TruB1 suppressed cell proliferation, which was mediated in part by let-7. Altogether, we reveal an unexpected function for TruB1 in promoting let-7 maturation and function.

molecular biology