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Biology subjects

Thodberg, S.

Publications and source records attributed to Thodberg, S..

3 recordsLinked to original sources

FMO and CYP monooxygenase families determine the metabolic flux of hydroxylated tryptamine derivatives in barley (Hordum vulgare) following pathogen infection

To counteract pathogenic microorganisms, plants execute a complex resistance response that includes major metabolic reprogramming and production of bioactive defensive compounds. Barley (Hordeum vulgare) is a major cereal crop, but suffers significant yield losses due to pathogen attack every year. Here we use an untargeted metabolomic approach to assess the diversity and shifts in key barley metabolites produced in response to Pyrenophora teres f. teres infection, a hemibiotrophic fungal pathogen and causal agent of net blotch disease. Tryptophan-derived compounds, including tryptamine, serotonin, and a novel indole alkaloid - 2-oxo-tryptamine (2OT) - were among the most significantly induced and abundant compounds, with mass spectrometry imaging revealing that these metabolites accumulate at the site of infection. A transcriptomic approach identified a flavin-containing monooxygenase (FMO), which was functionally characterized as a 2-oxo-tryptamine synthase (2OTS). In addition, a cytochrome P450 (CYP71P10) was characterized as a tryptamine-5-hydroxylase, responsible for serotonin biosynthesis. These characterized genes are tightly co-expressed with genes involved in tryptophan biosynthesis and signify a major metabolic flux towards indolic compounds after infection, potentially serving as bioactive phytoalexins. Additional microbial interactions using a biotrophic fungus (Blumeria hordei; powdery mildew), a hemibiotrophic bacterium (Pseudomonas syringae), and alternative cultivars suggest that these pathways represent a generally activated resistance response in barley. These results provide new insights within the barley defense response relevant for the development of disease resistant traits in cereal crops.

plant biology↗

The fern CYPome: Fern-specific cytochrome P450 family involved in convergent evolution of chemical defense.

Plant natural products encompass an enormous chemical diversity bearing witness to great molecular innovation that occured throughout land plant evolution. Cytochrome P450 monooxygenases (CYPs) catalyze a wide variety of monooxygenation reactions essential to the metabolic repertoire of plants natural products. Ferns constitute the second largest group of vascular plants and hold a significant phylogenetic position in land evolution, lying sister to seed plants. To date, CYP diversity has not been described for this taxon and pathway discovery in ferns in general is scarce, despite possessing a rich diversity of natural products. We analysed over 8000 available fern CYPs, classifing and characterizing the landscape of this super-enzyme group. Fern CYPs are dominated by fern-specific families ([~]60%), with the largest family - CYP981 - constituting approximately 15% of all predicted fern CYPs in the dataset. The abundancy and dynamics of the CYP981 family suggest a position equivalent to the CYP71 family present in seed plants, with potential roles in natural product biosynthesis. Ferns are the evolutionary oldest group to biosynthesize cyanogenic glycosides; amino acid-derived defense compounds. We show that CYP981F5 from the highly cyanogenic fern Phlebodium aureum catalyzes the conversion of phenylacetonitrile to mandelonitrile, an intermediate step in cyanogenic glycoside biosynthesis. The fern CYPome provides an important platform to further understand evolution of metabolite biosynthesis throughout the plant kingdom, and in ferns specifically.

plant biology↗

Across kingdom biased CYP-mediated metabolism via small-molecule ligands docking on P450 oxidoreductase

Metabolic control is mediated by the dynamic assemblies and function of multiple redox enzymes. A key element in these assemblies, the P450 oxidoreductase (POR), donates electrons and selectively activates numerous (>50 in humans and >300 in plants) cytochromes P450 (CYPs) controlling metabolism of drugs, steroids and xenobiotics in humans and natural product biosynthesis in plants. The mechanisms underlying POR-mediated CYP metabolism remain poorly understood and to date no ligand binding has been described to regulate the specificity of POR. Here, using a combination of computational modeling and functional assays, we identified ligands that dock on POR and bias its specificity towards CYP redox partners. Single molecule FRET studies revealed ligand docking to alter POR conformational sampling, which resulted in biased activation of metabolic cascades in whole cell assays. We propose the model of biased metabolism, a mechanism akin to biased signaling of GPCRs, where ligand docking on POR stabilizes different conformational states that are linked to distinct metabolic outcomes. Biased metabolism may allow designing pathway-specific therapeutics or personalized food suppressing undesired, disease related, metabolic pathways.

biophysics↗