Biology subjects

Thibaut, A.

Publications and source records attributed to Thibaut, A..

9 recordsLinked to original sources

bioRxiv2025

Individualised electrophysiological neural field models for the assessment of thalamocortical function in disorders of consciousness: a multicentre study

Understanding the neural mechanisms underlying disorders of consciousness (DoC) remains a major challenge, particularly in distinguishing limited awareness in minimally conscious state (MCS) and complete unawareness in unresponsive wakefulness syndrome, also coined vegetative state (UWS/VS). In this multicentre study, we fitted a biophysically informed corticothalamic neural field model to high-density EEG data from two large independent datasets, comprising 203 UWS patients, 270 MCS patients and 74 healthy controls. We then used the fitted parameters to simulate EEG time series on a per-subject basis and compared empirical and simulated complexity metrics. The model reliably captured the spectral features across different states of consciousness and revealed reduced corticothalamic integrity in DoC patients that was more pronounced in UWS than in MCS, supporting the mesocircuit hypothesis. Furthermore, the simulated EEG reproduced the complexity patterns of the empirical recordings, with permutation entropy emerging as a sensitive marker capable of distinguishing between MCS and UWS for both real and simulated time series.

neuroscience↗

bioRxiv2024

Exploring Neuroscience Researchers' Trust in Preprints through Citation Analysis

Preprints have emerged as efficient tools for fast and free dissemination of scientific findings. The present study explores the evolving landscape of preprints among the field of neuroscience and examines patterns and evolution of citations to preprints over time in this field. Leveraging bibliometric methods, we identified over 33,000 citations (1993-2022) to preprints within neuroscience publications indexed in Scopus. The findings elucidate a significant temporal increase in the number of documents citing preprints, reaching a peak of around 60 per 1,000 Scopus documents in 2021. Diverse document types, particularly reviews, exhibit a growing reliance on preprints as references. The most frequently cited preprint servers include bioRxiv, ArXiv, medRxiv, and PsyArXiv. Leading journals such as eLife and PLOS Computational Biology have cited preprints more than others. The United States takes the lead in citing preprints, followed by the United Kingdom and Germany. Using Scite.ai, motivations underlying preprint citations and the context in which they were cited were explored and the results are indicative of the "mentioning" nature of 93% of citations to preprints. Furthermore, the introduction and discussion sections have shown to include the highest number of citations to preprints. The findings highlight the dynamic transformation of preprints in neuroscience field.

neuroscience↗

bioRxiv2024

Individual trajectories for recovery of neocortical activity in disorders of consciousness

The evolution from disturbed brain activity to physiological brain rhythms can precede recovery in patients with disorders of consciousness (DoC). Accordingly, intriguing questions arise: What are the pathophysiological factors responsible for disrupted brain rhythms in patients with DoC, and are there potential pathways for individual patients with DoC to return to normal brain rhythms? We addressed these questions at the individual subject level using biophysical simulations based on electroencephalography (EEG). The main findings are that unconscious patients exhibit a loss of excitatory corticothalamic synaptic strength. Synaptic plasticity in this excitatory corticothalamic circuitry fosters physiological brain rhythms in the selection of patients with DoC. The extent to which this occurred was correlated with cerebral glucose uptake. The current findings emphasize the importance of excitatory thalamocortical activity in reestablishing normal brain rhythms after brain injury and show that biophysical modelling of the corticothalamic circuitry could help select patients that might be potentially receptive to treatment and undergo plasticity.

neuroscience↗

bioRxiv2023

Lateral frontoparietal effective connectivity differentiates and predicts state of consciousness in traumatic disorders of consciousness

Neuroimaging studies have suggested an important role for the default mode network (DMN) in disorders of consciousness (DoC). However, the extent to which DMN connectivity can discriminate DoC states - unresponsive wakefulness syndrome (UWS) and minimally conscious state (MCS) - is less evident. Particularly, it is unclear whether effective DMN connectivity, as measured indirectly with dynamic causal modelling (DCM) of resting EEG can disentangle UWS from healthy controls and from patients considered conscious (MCS+). Crucially, this extends to UWS patients with potentially "covert" awareness (minimally conscious star, MCS*) indexed by voluntary brain activity in conjunction with partially preserved frontoparietal metabolism as measured with positron emission tomography (PET+ diagnosis; in contrast to PET-diagnosis with complete frontoparietal hypometabolism). Here, we address this gap by using DCM of EEG data acquired from patients with traumatic brain injury in 11 UWS (6 PET- and 5 PET+) and in 12 MCS+ (11 PET+ and 1 PET-), alongside with 11 healthy controls. We provide evidence for a key difference in left frontoparietal connectivity when contrasting UWS PET- with MCS+ patients and healthy controls. Next, in a leave-one-subject-out cross-validation, we tested the classification performance of the DCM models demonstrating that connectivity between medial prefrontal and left parietal sources reliably discriminates UWS PET- from MCS+ patients and controls. Finally, we illustrate that these models generalize to an unseen dataset: models trained to discriminate UWS PET- from MCS+ and controls, classify MCS* patients as conscious subjects with high posterior probability (pp > .92). These results identify specific alterations in the DMN after severe brain injury and highlight the clinical utility of EEG- based effective connectivity for identifying patients with potential covert awareness. Author SummaryOur study investigates the role of the Default Mode Network (DMN) in individuals with disorders of consciousness (DoC), such as unresponsive wakefulness syndrome (UWS) and minimally conscious state (MCS). Previous neuroimaging studies have suggested a role for the DMN in DoC, but its ability to differentiate between UWS and MCS remain unclear. Using advance brain imaging and modelling techniques, we analyzed data from DoC patients with traumatic brain injury and healthy controls. Our findings reveal a key difference in left frontoparietal connectivity when comparing UWS to MCS patients and healthy individuals. To validate our results, we employed a robust cross-validation approach, which demonstrated that the connectivity between frontal and left parietal brain regions reliably discriminates UWS patients from MCS patients and controls. Furthermore, we extended our analysis to include patients with potential covert awareness, showcasing the clinical utility of our findings. We successfully classified these patients as conscious with high accuracy. This research significantly contributes to our understanding of the DMN in DoC and highlights the potential use of electroencephalography-based connectivity analysis in clinical settings. By identifying specific alterations in the DMN after severe brain injury, our study may aid in the accurate diagnosis and management of individuals with disorders of consciousness, potentially improving their overall outcomes.

neuroscience↗

bioRxiv2021

Disruption in structural-functional network repertoire and time resolved subcortical-frontoparietal connectivity in disorders of consciousness

Understanding recovery of consciousness and elucidating its underlying mechanism is believed to be crucial in the field of basic neuroscience and medicine. Ideas such as the global neuronal workspace and the mesocircuit theory hypothesize that failure of recovery in conscious states coincide with loss of connectivity between subcortical and frontoparietal areas, a loss of the repertoire of functional networks states and metastable brain activation. We adopted a time-resolved functional connectivity framework to explore these ideas and assessed the repertoire of functional network states as a potential marker of consciousness and its potential ability to tell apart patients in the unresponsive wakefulness syndrome (UWS) and minimally conscious state (MCS). In addition, prediction of these functional network states by underlying hidden spatial patterns in the anatomical network, i.e. so-called eigenmodes, were supplemented as potential markers. By analysing time-resolved functional connectivity from fMRI data, we demonstrated a reduction of metastability and functional network repertoire in UWS compared to MCS patients. This was expressed in terms of diminished dwell times and loss of nonstationarity in the default mode network and fronto-parietal subcortical network in UWS compared to MCS patients. We further demonstrated that these findings co-occurred with a loss of dynamic interplay between structural eigenmodes and emerging time-resolved functional connectivity in UWS. These results are, amongst others, in support of the global neuronal workspace theory and the mesocircuit hypothesis, underpinning the role of time-resolved thalamo-cortical connections and metastability in the recovery of consciousness.

neuroscience↗

bioRxiv2021

Posterior integration and thalamo-frontotemporal broadcasting are impaired in disorders of consciousness

The study of the brains static and dynamical activity is opening a valuable source of assistance for the clinical assessment of patients with disorders of consciousness. For example, glucose uptake and dysfunctional spread of naturalistic and synthetic stimuli has proven useful to characterize hampered consciousness. However, understanding of the mechanisms behind loss of consciousness following brain injury is still missing. Here, we study the propagation of endogenous and in-silico exogenous perturbations in patients with disorders of consciousness, based upon directed and causal interactions estimated from resting-state fMRI. We found that patients with disorders of consciousness suffer decreased capacity for neural propagation and responsiveness to events, and that this can be related to glucose metabolism as measured with [18F]FDG-PET. In particular, we show that loss of consciousness is related to the malfunctioning of two neural circuits: the posterior cortical regions failing to convey information, in conjunction with reduced broadcasting of information from subcortical, temporal, parietal and frontal regions. These results seed light on the mechanisms behind disorders of consciousness, triangulating network function with basic measures of brain integrity and behavior. HighlightsO_LIPropagation of neural events and network responses are disrupted in patients with DoC. C_LIO_LILoss of consciousness is related to the malfunctioning of two neural circuits. C_LIO_LIPosterior cortical regions lack to integrate information in altered consciousness. C_LIO_LIBreakdown of information broadcasting of subcortical cortical areas in DoC. C_LIO_LILoss of network responses in DoC patients is related to glucose metabolism. C_LI

neuroscience↗

bioRxiv2020

Loss of consciousness reduces the stability of brain hubs and the heterogeneity of brain dynamics

Low-level states of consciousness are characterised by disruptions of brain dynamics that sustain arousal and awareness. Yet, how structural, dynamical, local and network brain properties interplay in the different levels of consciousness is unknown. Here, we studied the fMRI brain dynamics from patients that suffered brain injuries leading to a disorder of consciousness and from subjects undergoing propofol-induced anaesthesia. We showed that pathological and pharmacological low-level states of consciousness displayed less recurrent, less diverse, less connected, and more segregated synchronization patterns than conscious states. We interpreted these effects using whole-brain models built on healthy and injured connectomes. We showed that altered dynamics arise from a global reduction of network interactions, together with more homogeneous and more structurally constrained local dynamics. These effects were accentuated using injured connectomes. Notably, these changes lead the hub regions to lose their stability during low-level states of consciousness, thus attenuating the core-periphery structure of brain dynamics.

neuroscience↗

bioRxiv2020

Convolutional neural network MRI segmentation for fast and robust optimization of transcranial electrical current stimulation of the human brain

The segmentation of structural MRI data is an essential step for deriving geometrical information about brain tissues. One important application is in transcranial electrical stimulation (e.g., tDCS), a non-invasive neuromodulatory technique where head modeling is required to determine the electric field (E-field) generated in the cortex to predict and optimize its effects. Here we propose a deep learning-based model (StarNEt) to automatize white matter (WM) and gray matter (GM) segmentation and compare its performance with FreeSurfer, an established tool. Since good definition of sulci and gyri in the cortical surface is an important requirement for E-field calculation, StarNEt is specifically designed to output masks at a higher resolution than that of the original input T1w-MRI. StarNEt uses a residual network as the encoder (ResNet) and a fully convolutional neural network with U-net skip connections as the decoder to segment an MRI slice by slice. Slice vertical location is provided as an extra input. The model was trained on scans from 425 patients in the open-access ADNI+IXI datasets, and using FreeSurfer segmentation as ground truth. Model performance was evaluated using the Dice Coefficient (DC) in a separate subset (N=105) of ADNI+IXI and in two extra testing sets not involved in training. In addition, FreeSurfer and StarNEt were compared to manual segmentations of the MRBrainS18 dataset, also unseen by the model. To study performance in real use cases, first, we created electrical head models derived from the FreeSurfer and StarNEt segmentations and used them for montage optimization with a common target region using a standard algorithm (Stimweaver) and second, we used StarNEt to successfully segment the brains of minimally conscious state (MCS) patients having suffered from brain trauma, a scenario where FreeSurfer typically fails. Our results indicate that StarNEt matches FreeSurfer performance on the trained tasks while reducing computation time from several hours to a few seconds, and with the potential to evolve into an effective technique even when patients present large brain abnormalities.

bioinformatics↗

bioRxiv2018

Decreased integration of EEG source-space networks in disorders of consciousness

Increasing evidence links disorders of consciousness (DOC) with disruptions in functional connectivity between distant brain areas. However, to which extent the balance of brain network segregation and integration is modified in DOC patients remains unclear. Using high-density electroencephalography (EEG), the objective of our study was to characterize the local and global topological changes of DOC patients functional brain networks.\n\nResting state high-density-EEG data were collected and analyzed from 82 participants: 61 DOC patients recovering from coma with various levels of consciousness (EMCS (n=6), MCS+ (n=29), MCS- (n=17) and UWS (n=9)), and 21 healthy subjects (i.e., controls). Functional brain networks in five different EEG frequency bands and the broadband signal were estimated using an EEG connectivity approach at the source level. Graph theory-based analyses were used to evaluate group differences between healthy volunteers and patient groups.\n\nResults showed that networks in DOC patients are characterized by impaired global information processing (network integration) and increased local information processing (network segregation) as compared to controls. The large-scale functional brain networks had integration decreasing with lower level of consciousness.

neuroscience↗