Biology subjects

Szymczak, A.

Publications and source records attributed to Szymczak, A..

3 recordsLinked to original sources

bioRxiv2024

Phageome transfer from gut to circulation and its regulation by human immunity

Bacteriophages dominate the human gut virome, yet their presence in the bloodstream remains orders of magnitude lower, suggesting that systemic dissemination is tightly regulated. How gut phages cross the intestinal barrier and which factors govern their persistence in circulation remain poorly understood, largely because prior studies characterized gut and blood viromes independently rather than in matched samples from the same individuals. Here we investigated phage translocation by shotgun metagenomics of matched colon mucosal biopsies and sera from 37 individuals with phage specific IgG profiling using a pan-phage proteome-derived phage display epitope library, complemented by an oral T4 model in mice. We found that phage abundance decreased by approximately 98% from intestinal mucosa to serum. The mucosal virome was dominated by Microviridae, which also accounted for most of the translocated phages. In the mouse model, phage titers dropped stepwise by [~]106 fold from gut content to blood, with the sharpest reduction occurring at the mucosal-lymphatic interface. Among translocated viral operational taxonomic units 93.1% lacked taxonomic assignment, yet network analysis revealed reproducible co-enrichement with annotated families including Herelleviridae and Straboviridae, which showed significantly higher gut abundance among translocated observations (FDR <0.01). IgG reactivity against a specific phage in 90% of investigated individuals was associated with the absence of that phage in the patients virome; at the collective population analysis, IgG reactivity showed a weak negative association with serum phage abundance. These observations suggest antibody-mediated clearance that limits systemic persistence. Together, these findings suggest that rare epithelial passage, lymphatic trafficking, and IgG-mediated neutralization act as sequential filters that limit which gut phages reach and persist in the circulation, with implications for phage therapy delivery and for the dissemination of accessory genetic elements beyond the intestine.

microbiology↗

bioRxiv2020

Stress priming affects fungal competition - evidence from a combined experimental and modeling study

Priming, an inducible stress defense strategy that prepares an organism for an impending stress event, is common in microbes and has been studied mostly in isolated organisms or populations. How the benefits of priming change in the microbial community context and, vice versa, whether priming influences competition between organisms, remains largely unknown. In this combined experimental and modeling study, we developed a cellular automaton model based on dedicated data of different isolates of soil fungi in isolation and pairwise competition experiments. With the model, we simulated growth of the ascomycete Chaetomium elatum competing against other fungi to understand which species traits influence the benefit of priming and the effect of priming on competition. We showed that competition changes the priming benefit compared to isolated growth, and that it depends not only on the primeable species itself, but also on the competitors traits such as growth rate, primeability and stress susceptibility. In addition, we showed that priming benefits were not always reflected in the competitive outcome. With this study, we transferred insights on priming from studies in isolation to the community context. This is an important step towards understanding the role of inducible defenses in microbial community assembly and composition.

ecology↗

bioRxiv2019

Diversity of responses of soil saprobic fungi to recurring heat events

As a consequence of ongoing climate change, the frequency of extreme heat events is expected to increase. Recurring heat pulses may disrupt functions supported by soil microorganisms, thus affecting the entire ecosystem. However, most perturbation experiments only test effects of single heat events, and therefore it remains largely unknown how soil microorganisms react to repeated pulse events. Here we present data from a lab experiment exposing 32 filamentous fungi, originally isolated from the same soil, to sequential heat perturbations. Soil saprobic fungi isolates were exposed to one or two heat pulses: mild (35{degrees}C/2h), strong (45{degrees}C/1h), or both in sequence (35{degrees}C/2h+45{degrees}C/1h), and we assessed growth rate. Out of the 32 isolates 13 isolates showed an antagonistic response, 3 isolates a synergistic response and 16 isolates responded in an additive manner. These differences in species responses to the thermal environment may contribute to species coexistence, and such dissimilarities in thermal perturbation responses may be a key aspect influencing ecosystem services that soil saprobic fungi support.

ecology↗