Biology subjects

Suyama, K.

Publications and source records attributed to Suyama, K..

7 recordsLinked to original sources

bioRxiv2026

Progressive Lineage Restriction of Bergmann Glia-like Progenitors during Postnatal Cerebellar Development

Bergmann glia-like progenitors (BGLPs) are transient astroglial progenitors in the postnatal cerebellum, but how their lineage potential changes during development remains incompletely understood. Our previous electroporation-based study suggested that P0 BGLPs possess broader lineage potential than P6 BGLPs. Here, we performed recombination-based lineage tracing by cerebellar surface application of tamoxifen to Ai9/+; GlastCreERT2/+ mice and temporally analyzed the progeny of BGLPs labeled at P0, P3, P6, and P8. We found that BGLPs undergo progressive lineage restriction during postnatal development. P0 BGLPs gave rise to Bergmann glial cells (BGs), inner granule cell layer astrocytes (IGL astrocytes), white matter astrocytes (WM astrocytes), and molecular layer inhibitory neurons (ML-INs), confirming our previous electroporation-based findings. In contrast, P3 BGLPs generated BGs, IGL astrocytes, and WM astrocytes, whereas P6 BGLPs generated BGs and IGL astrocytes, and P8 BGLPs generated predominantly BGs. Thus, BGLP lineage output was progressively restricted from four progeny categories at P0 to a predominantly BG-restricted output by P8, suggesting that BGLPs dynamically adjust their cellular output during postnatal cerebellar maturation. Additional temporal analyses suggested that ML-INs are unlikely to be generated directly from P0 BGLPs, but may arise indirectly through astrocyte-like progenitors (AsLPs) and inhibitory neuron progenitors (INPs). These findings identify postnatal BGLPs as a useful in vivo model for studying progressive lineage restriction and stage-specific cellular supply during cerebellar development.

developmental biology↗

bioRxiv2026

Xenium-based spatial transcriptomic screening identifies candidate mRNAs localized in neuronal and glial processes of the adult mouse cerebellum

Subcellular mRNA localization contributes to local protein synthesis and functional compartmentalization in polarized cells, including neurons and glial cells. Although process-localized mRNAs have been identified by in situ hybridization, reporter-based analyses, and compartment-based transcriptomic approaches, systematic screening of such mRNAs within intact brain tissue while preserving tissue architecture remains challenging. Here, we developed a Xenium-based spatial transcriptomic screening strategy to identify candidate mRNAs localized in neuronal and glial processes in the adult mouse cerebellum. We focused on the molecular layer, which is densely occupied by Purkinje cell dendrites, Bergmann glial radial processes, and granule cell parallel fibers, but contains relatively few cell bodies. Using a Xenium Prime 5K dataset from adult mouse cerebellar sections, we first identified 199 genes whose transcripts were enriched in the molecular layer. By further focusing on DAPI-negative, process-rich regions and reducing contributions from molecular layer cell bodies, we extracted 126 candidate process-localized genes. Comparison with Allen Brain Atlas in situ hybridization data supported molecular layer localization with process-like patterns for 28 of 32 evaluable candidates. Integration with a published adult cerebellar single-nucleus RNA-seq atlas provided information on the possible cellular origins of these candidates. Gene Ontology analysis revealed enrichment of terms related to intracellular transport, cell projection structures, and synaptic function. These findings support the usefulness of a Xenium-based spatial transcriptomic first-screening strategy for identifying candidate process-localized mRNAs in intact brain tissue and provide a resource for studying RNA localization in cerebellar neuronal and glial processes.

Molecular Biology↗

bioRxiv2026

MEIS1 is Required for Establishing Bergmann Glia-Specific Properties in the Developing Cerebellum

Compared to normal multipolar astrocytes, Bergmann glial cells (BGs), specifically differentiated astrocytes in the cerebellum, possess unique unipolar morphology and additional cellular functions. However, the molecular mechanisms that confer BG-specific properties onto normal multipolar astrocytes remain unknown. Here, we show that the transcription factor, MEIS1, is involved in BGs acquiring their unique characteristics. Targeted disruption of Meis1 in the whole cerebellum or astroglial lineage cells resulted in a marked reduction of BGs accompanied by an increase in multipolar astrocytes in mice. Postnatal deletion of Meis1 in Bergmann glia-like progenitors (BGLPs), which produce both BGs and multipolar astrocytes, suppressed their differentiation into BGs while promoting into multipolar astrocytes. Single-cell RNA sequencing, immunohistochemistry, and ChIP-Atlas analyses indicated that MEIS1 directly upregulates expression of BG-specific genes, including Vimentin and Zeb2, which are known to contribute to the correct localization and the unipolar process formation of BGs. These findings suggest that MEIS1 promotes the endowment of BG-specific properties to astrocytes by controlling the expression of BG-specific genes, thereby ensuring proper differentiation of BGLPs into BGs.

developmental biology↗

bioRxiv2025

Pak, a downstream gene of ecdysone signaling, determines left-right polarity in the Drosophila brain through neuronal cell chirality

Left-right (LR) asymmetry is a conserved characteristic of the brain in various animals and is related to its higher-order functions. The Drosophila brain has an LR asymmetric structure known as an asymmetrical body (AB). LR asymmetric neurite remodeling lateralizes the AB, and ecdysone signaling determines LR specificity. However, the mechanisms underlying LR specificity remain unclear. We found that the Slit/Dreadlocks/Roundabout/p21-activated kinase (Pak) signaling axis determines the LR polarity of the AB downstream of ecdysone signaling in the type II neuroblast lineage before LR asymmetric neurite remodeling. In Drosophila, the intrinsic chirality of cells (cell chirality) defines the LR asymmetry of various non-neuronal organs. We suggested that neurons derived from type II neuroblasts exhibit cell chirality, which is established through Pak and ecdysone signaling and determines the LR polarity of the AB. As cell chirality is broadly observed in eukaryotes, our study reveals a novel mechanism underlying LR asymmetry of the brain.

neuroscience↗

bioRxiv2025

Lineage Analysis and Molecular Characterization of Bergmann Glia-like Progenitors in the Postnatal Mouse Cerebellum using in vivo Electroporation and Spatial Transcriptomics

In the mammalian cerebellum, three types of astroglial cells--Bergmann glial cells (BGs), inner granule cell layer (IGL) astrocytes, and white matter (WM) astrocytes--arise in postnatal timing from two types of progenitors: Bergmann glia-like progenitors (BGLPs) and astrocyte-like progenitors (AsLPs). In contrast to AsLPs, which are commonly observed in other brain regions, BGLPs have not been well studied. Here we investigate their dynamic changes in number, their differentiation abilities and their gene expression profiles during cerebellar development. BGLPs and AsLPs decrease in number as development progresses from P0, and are almost absent by P10. We developed an electroporation-based method to investigate the progeny cells of BGLPs. We found that BGLPs at P6 differentiate into BGs and IGL astrocytes, but not into WM astrocytes, which is consistent with a previous report. However, BGLPs at P0 were observed to differentiate into not only BGs and IGL astrocytes, but also WM astrocytes, indicating that P0 BGLPs possess wider pluripotency than P6 BGLPs. By conducting spatial transcriptomic analysis of the cerebellum at P0 and P6 with over 5,000 probes (Xenium, 5k), we successfully obtained clusters corresponding to BGLPs at P0 and P6, respectively. Further informatics analyses suggested that P0 BGLPs exhibit more stem cell-like features, while P6 BGLPs show a shift toward BG-like characteristics. This study, which includes transcriptome big data, will contribute to understanding the differentiation of BGs and astrocytes, as well as other types of cells, during postnatal cerebellar development.

developmental biology↗

bioRxiv2023

Protein phosphatase 1 regulates core PCP signaling

AbstractPCP signaling polarizes epithelial cells within the plane of an epithelium. Core PCP signaling components adopt asymmetric subcellular localizations within cells to both polarize and coordinate polarity between cells. Achieving subcellular asymmetry requires additional effectors, including some mediating post-translational modifications of core components. Identification of such proteins is challenging due to pleiotropy. We used mass spectrometry-based proximity labeling proteomics to identify such regulators in the Drosophila wing. We identified the catalytic subunit of Protein Phosphatase1, Pp1-87B, and show that it regulates core protein polarization. Pp1-87B interacts with the core protein Van Gogh and at least one Serine/Threonine kinase, Dco/CKIc, that is known to regulate PCP. Pp1-87B modulates Van Gogh subcellular localization and directs its dephosphorylation in vivo. PNUTS, a Pp1 regulatory subunit, also modulates PCP. While the direct substrate(s) of Pp1-87B in control of PCP is not known, our data support the model that cycling between phosphorylated and unphosphorylated forms of one or more core PCP components may regulate acquisition of asymmetry. Finally, our screen serves as a resource for identifying additional regulators of PCP signaling.

developmental biology↗

bioRxiv2022

Redox signaling regulates breast cancer metastasis via HIF1alpha-stimulated EMT dynamics and metabolic reprogramming

Metastasis is orchestrated by phenotypic and metabolic reprogramming underlying tumor aggressiveness. Redox signaling by mammary tumor knockdown (KD) of the antioxidant glutathione peroxidase 2 (GPx2) enhanced metastasis via dynamic changes in epithelial-to-mesenchymal transition. Single cell RNA sequencing (scRNA-seq) of the control and PyMT/GPx2 KD mammary tumor revealed six luminal and one basal/mesenchymal like (cluster 3) subpopulations. Remarkably, GPx2 KD enhanced the size and basal/mesenchymal gene signature of cluster 3 as well as induced epithelial/mesenchymal (E/M) clusters which expressed markers of oxidative phosphorylation and glycolysis, indicative of hybrid metabolism. These data were validated in human breast cancer xenografts and were supported by pseudotime cell trajectory analysis. Moreover, the E/M and M states were both attenuated by GPx2 gain of function or HIF1 inhibition, leading to metastasis suppression. Collectively, these results demonstrate that redox/HIF1 signaling promotes mesenchymal gene expression, resulting in E/M clusters and a mesenchymal root subpopulation, driving phenotypic and metabolic heterogeneity underlying metastasis. SignificanceBy leveraging single cell RNA analysis, we were able to demonstrate that redox signaling by GPx2 loss in mammary tumors results in HIF1 signaling, which promotes partial and full EMT conversions, represented by distinct tumor cell subpopulations, which in turn express hybrid and binary metabolic states. These data underscore a phenotypic and metabolic co-adaptation in cancer, arguing in favor of the GPx2-HIF1 axis as a therapeutic platform for targeting tumor cell metastasis.

cancer biology↗