Biology subjects

Sun, A. R.

Publications and source records attributed to Sun, A. R..

3 recordsLinked to original sources

bioRxiv2025

Mechanical Memory Primes Cells for Confined Migration

When migratory cells move from one stiffness niche to another in vivo, they are exposed to highly confined spaces imposed by dense extracellular matrix (ECM) networks and inter-tissue boundaries. Cells that originate from one niche possess distinct mechanosensitive adaptations that influence their response to their new niche, a concept known as mechanical memory. However, the mechanisms by which this memory is acquired, and the degree to which it influences migratory potential and decision-making processes in confinement remain poorly understood. Here, we combine stiffness priming using polyacrylamide hydrogels with a confinement platform to screen mechanical memory across healthy and transformed cells. Using a dose-and- passage approach, we find that in stiffness-sensitive cells primed on soft substrates navigate confinement more efficiently. Bulk RNA sequencing identifies NFATC2 as a transcription factor that mediates mechanical memory by reprogramming gene expression in stiffness-sensitive cells. siRNA-induced knockdown of NFATC2 in memory-sensitive cells confirmed its necessity for mechanical memory acquisition and subsequent confined migration enhancement. Interestingly, highly invasive cancer cells exhibit minimal sensitivity to prior mechanical priming, suggesting differential adaptation strategies. These findings reveal mechanical memory as a cell-intrinsic property shaped by past mechanical environments and highlight potential implications for controlling migration in wound repair, fibrosis, and disease progression.

cell biology↗

bioRxiv2023

Localized oxygen control in a microfluidic osteochondral interface model recapitulates bone-cartilage crosstalk during osteoarthritis

Osteoarthritis (OA) is characterized by the dysregulation of the osteochondral interface between bone and cartilage. In vitro models that accurately mimic this interface hold great potential for understanding OA pathophysiology and screening therapeutic agents. Presently, research efforts have focused on emulating heterogeneity in structural and mechanical attributes of the extracellular matrix (ECM) at the osteochondral interface. However, the precise simulation of differential oxygen gradients experienced by chondrocytes and osteoblasts in vivo remains a substantial obstacle for modeling osteo-chondral interactions effectively. To overcome this limitation, we show that micropatterned granular hydrogels, which are small microgel particles swelled in liquid culture media to create a shear-yielding jammed-packed solid, can be used to control the delivery of oxygen scavenging agents in a simple and scalable manner. Hypoxic granular hydrogels formulated with Oxyrase could maintain <1% oxygen concentration in a conventional cell culture incubator. Primary human chondrocytes maintained in the hypoxic hydrogels expressed a more anabolic phenotype similar to those cultured in a hypoxic incubator. The granular hydrogels can be readily patterned in a microfluidic device to generate a localized hypoxic environment, mimicking the differential oxygen levels at the osteochondral tissue interface (i.e. osteoblast at 20% and chondrocyte at 2% oxygen). Using this microfluidic coculture model, we paired healthy human chondrocytes with osteoblasts isolated from non-sclerotic and sclerotic subchondral bone to investigate how oxygen environment modulates osteoblast-chondrocyte crosstalk during OA. In a differential oxygen environment, the osteoblast-chondrocyte co-culture model showed sclerotic osteoblasts inducing chondrocyte collagen expression changes through increased MMP13 and ADAM15 production, unlike in a uniform normoxic oxygen environment, where the change was driven by altered collagen gene expression favoring Type I over Type II collagen. Furthermore, differential oxygen conditions enabled the identification of extensive transcriptional alterations induced by sclerotic osteoblasts, which involved inflammatory NF-{kappa}{beta}, TGF-{beta}/BMP, and IGF signaling pathways, that was otherwise not detectable in a uniform normoxic co-culture. The microfluidic model with localized oxygen variations effectively mimics physiologically relevant osteoblast-chondrocyte crosstalk, providing valuable insights into OA pathophysiology.

bioengineering↗

bioRxiv2023

Hybrid hydrogel-extracellular matrix scaffolds identify distinct ligand and mechanical signatures in cardiac aging

Extracellular matrix (ECM) remodeling of cardiac tissue is a key contributor to age-related cardiovascular disease and dysfunction. Aberrant secretion, structural perturbations, and degradation of specific ECM components lead to significant alterations in ECM properties that disrupt healthy cell and tissue homeostasis. These changes in ECM are multifaceted, as alterations in ligand presentation, including both biochemical and architectural aspects, are often accompanied by stiffness changes, clouding our understanding of how and which ECM properties contribute to a dysfunctional state. To identify the specific roles of these interconnected ECM cues and elucidate their mechanistic regulation in cellular function, we developed a material system that can independently present these two distinct matrix properties, i.e., ligand presentation and stiffness, to cultured cells in vitro. We describe a decellularized ECM-synthetic hydrogel hybrid scaffold that maintains native matrix composition and organization of young or aged murine cardiac tissue with independently tunable scaffold mechanics that mimic young or aged tissue stiffness. Seeding these scaffolds with primary cardiac fibroblasts (CFs) from young or aged mice, we identify distinct age- and ECM-dependent mechanisms of CF activation. Importantly, we show that ligand presentation of young ECM can outweigh profibrotic stiffness cues typically present in aged ECM in maintaining or driving CF quiescence, thereby highlighting the unique roles of ECM in aging. Ultimately, these tunable scaffolds can enable the discovery of specific ECM targets to prevent aging dysfunction and promote rejuvenation. DECIPHER: DECellularized In Situ Polyacrylamide Hydrogel-ECM hybRid

bioengineering↗