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Sukhadia, S. S.

Publications and source records attributed to Sukhadia, S. S..

2 recordsLinked to original sources

Predicting Distant Recurrences in Invasive Breast Carcinoma Patients Using Clinicopathological Data: A cross-institutional and AI-based study

Breast cancer ranks second in the most common cancer in women worldwide with 30% of cases resulting into recurrence of the disease at distant organs post the treatment. While clinicians have utilized several clinicopathological measurements for prediction of distant recurrences in invasive breast carcinoma (IBC), none of those studies have showcased the potential of combining clinicopathological evaluations of IBC tumors pre and post therapies using machine learning (ML) or artificially intelligent (AI) models to predict the distant recurrence of the disease in respective patients. The goal of our study was to determine whether classification-based ML/AI techniques can predict distant recurrences in IBC patients using key clinicopathological measurements that includes pathological staging of tumor and surrounding lymph nodes deemed both pre- and post-neoadjuvant therapy, imaging-based therapy responses, and the status of adjuvant therapy administered to patients. We trained and tested clinicopathological ML/AI model using dataset from Duke University and validated it using external dataset from Dartmouth Hitchcock Medical Center (DHMC). Random Forest (RF) model performed best compared to C-Support Vector Classifier (SVC) and Multi-Layer Perceptron (MLP) yielding AUC ranging 0.75-1.0 (p<0.002) across both the institutions, thereby demonstrating the cross-institutional portability and validity of ML/AI models in the field of clinical research in cancer.

bioinformatics↗

ImaGene: A web-based software platform for tumor radiogenomic evaluation and reporting

The field of radiomics has undergone several advancements in approaches to uncovering hidden quantitative features from tumor imaging data for use in guiding clinical decision-making for cancer patients. Radiographic imaging techniques provide insight into the imaging features of tumor regions of interest (ROIs), while immunohistochemistry and sequencing techniques performed on biopsy samples yield omics data. Potential associations between tumor genotype and phenotype can be identified from imaging and omics data via traditional correlation analysis, as well as through artificial intelligence (AI) models. However, at present the radiogenomics community lacks a unified software platform for which to conduct such analyses in a reproducible manner. To address this gap, we propose ImaGene, a web-based platform that takes tumor omics and imaging data sets as input, performs correlation analysis between them, and constructs AI models (optionally using only those features found to exhibit statistically significant correlation with some element of the opposing dataset). ImaGene has several modifiable configuration parameters, providing users complete control over their analysis. For each run, ImaGene produces a comprehensive report displaying a number of intuitive model diagnostics. To demonstrate the utility of ImaGene, exploratory studies surrounding Invasive Breast Carcinoma (IBC) and Head and Neck Squamous Cell Carcinoma (HNSCC) on datasets acquired from public databases are conducted. Potential associations are identified between several imaging features and 6 genes: CRABP1, SMTNL2, FABP1, HAS1, FAM163A and DSG1 for IBC, and 4 genes: CEACAM6, NANOG, ACSM2B, and UPK2 for HNSCC. In summary, the software provides researchers with a transparent tool for which to begin radiogenomic analysis and explore possible further directions in their research. We anticipate that ImaGene will become the standard platform for tumor analyses in the field of radiogenomics due to its ease of use, flexibility, and reproducibility, and that it can serve as an enabling centrepoint for an emerging radiogenomic knowledge base.

bioinformatics↗