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Biology subjects

Sudevan, S.

Publications and source records attributed to Sudevan, S..

4 recordsLinked to original sources

From Networks to Traveling Waves and Back: Persistent Pattern Generation Across Collective Phases in C. elegans

Thousands of C. elegans placed adjacent to a food patch self-organize sequentially into a visible branching network off-food and then a coherent traveling consumption wave -- a multi-phase collective phenomenon we term wurmuration. Dynamical networks and traveling waves have previously only been described separately in this organism. Using a minimal agent-based model, we show that a single generative program produces both collective phases and their topological continuity. Four components (elongated body geometry, roaming-dwelling switching, preferred local worm density navigation, and food chemotaxis) are necessary and sufficient; what changes between phases is only the food environment they act on. We show that network-like organization persists cryptically (visible only through temporal integration) across the qualitatively distinct wave phase, indicating that the two phases differ in environmental context rather than in underlying behavioral rules. Finally, tuning the preferred density component alone recapitulates N2 vs. DA609 differences in wave dynamics; N2 additionally shows greater per-trial variability in cryptic network topology than DA609, in line with less consistent collective engagement in this lower-sociality strain. Our findings suggest that complex multi-phase collective phenomena can be unified by a shared generative program, shifting the description of spatial organization from the emergent patterns to their underlying components.

biophysics↗

Increased mitochondrial Ca2+ contributes to health decline with age and Duchene muscular dystrophy in C. elegans.

Sarcopenia is a geriatric syndrome characterized by an age-related decline in skeletal muscle mass and strength. Here, we show that suppression of mitochondrial calcium uniporter (MCU)-mediated Ca2+ influx into mitochondria in the body wall muscles of the nematode Caenorhabditis elegans improved the sarcopenic phenotypes, blunting movement and mitochondrial structural and functional decline with age. We found that normally aged muscle cells exhibited elevated resting mitochondrial Ca2+ levels and increased mitophagy to eliminate damaged mitochondria. Similar to aging muscle, we found that suppressing MCU function in muscular dystrophy improved movement via reducing elevated resting mitochondrial Ca2+ levels. Taken together, our results reveal that elevated resting mitochondrial Ca2+ levels contribute to muscle decline with age and in muscular dystrophy. Further, modulation of MCU activity may act as a potent pharmacological target in various conditions involving muscle loss.

cell biology↗

Histone chaperone Nucleophosmin regulates transcription of key genes involved in oral tumorigenesis.

Nucleophosmin (NPM1) is a multifunctional histone chaperone that can activate RNA Polymerase II-driven chromatin transcription. Acetylation of NPM1 by acetyltransferase p300 has been shown to further enhance its transcription activation potential. Moreover, its total and acetylated pools are increased in oral squamous cell carcinoma. However, the role of NPM1 or its acetylated form (AcNPM1) in transcriptional regulation in cells is not fully elucidated. Using ChIP-seq analyses, we show that AcNPM1 co-occupies marks of active transcription at promoters and DNase I hypersensitive sites at enhancers. Moreover, NPM1 interacts with proteins involved in transcription, including RNA Pol II, general transcription factors, mediator subunits, histone acetyltransferase complexes, and chromatin remodelers. Moreover, its histone chaperone also contributes to transcriptional activation. We further show that AcNPM1 regulates key genes required for proliferation, migration and invasion potential of oral cancer cells and knockdown of NPM1 mitigates these processes in cells as well as orthotopic tumors in mice. Collectively, these results establish that AcNPM1 functions as a coactivator and regulates the expression of key genes involved in oral tumorigenesis.

biochemistry↗

The haploinsufficient tumor suppressor Tip60 negatively regulates the oncogenic Aurora B kinase

The Aurora kinases represent a group of serine/threonine kinases which are crucial regulators of mitosis. Dysregulated Aurora kinase B (AurkB) expression, stemming from genomic amplification, increased gene transcription or overexpression of its allosteric activators, is capable of initiating and sustaining malignant phenotypes. Although AurkB level in cells is well-orchestrated, studies that relate to its stability or activity, independent of mitosis, are lacking. We report that AurkB undergoes acetylation in vitro by lysine acetyltransferases (KATs) belonging to different families, namely by p300 and Tip60. The haploinsufficient tumor suppressor Tip60 acetylates two highly conserved lysine residues within the kinase domain of AurkB which not only impinges the protein stability but also its kinase activity. These results signify a probable outcome on the increase in \"overall activity\" of AurkB upon Tip60 downregulation, as observed under cancerous conditions. The present work, therefore, uncovers an important functional interplay between AurkB and Tip60, frailty of which may be an initial event in carcinogenesis.

biochemistry↗