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Subbiah, V. K.

Publications and source records attributed to Subbiah, V. K..

6 recordsLinked to original sources

Spatial patterns of mosquito communities and monkey malaria vectors in a tropical riverine forest in Sabah, Malaysian Borneo

Understanding how vector ecology intersects with host behaviour is essential for predicting zoonotic disease risk in tropical ecosystems. We conducted a two-year field study (November 2016-October 2018) in a riverine forest in Sabah, Malaysian Borneo, to characterize mosquito communities and the spatial distribution of potential simian-malaria vectors. Mosquitoes were sampled on 44 nights using CO{square}-baited light traps repeatedly deployed along a 500 m transect at three distances from the river (0, 250, 500 m) and two vertical strata (ground and canopy), yielding 244 trap collections across repeated sampling nights. In total, 9,928 mosquitoes were collected, dominated by Culex spp. (9,079; 91.4%), whereas Anopheles spp. were rare (153; 1.5%); most remaining specimens were unidentified to genus, and species-level identification was limited primarily to Anopheles. Nevertheless, female Anopheles (n=57) were more frequently detected near the river and less commonly at intermediate distance, and tended to be captured more often in ground traps. Zero-inflated negative binomial GLMMs based on the full mosquito dataset indicated significant effects of river distance and height on mosquito abundance, while night-time temperature and humidity showed no detectable effects. The zero-inflated structure of the data further suggested that many zero captures reflected true absence rather than sampling variability. The Anopheles assemblage was dominated by An. balabacensis, and molecular screening of 57 females detected simian Plasmodium DNA in two individuals. Overall, these findings suggest that river-edge habitats may represent localized areas where vectors persist and where primates and human activities overlap, creating repeated opportunities for host-vector contact even when vector densities are low.

ecology↗

Impact of Group Size and Habitat Disturbance on Parasitic Infection in Free-ranging Proboscis Monkeys

Group-living primates experience the benefits and costs associated with sociality, including an elevated risk of parasite transmission. However, the relative influence of group type (i.e., social structure), group size, and habitat disturbance on parasitic infection remains unclear, particularly in Southeast Asian primates. In this study, the abundance of intestinal parasites in proboscis monkeys (Nasalis larvatus) inhabiting a riverine forest along the Menanggul River, Sabah, Malaysian Borneo, was investigated. Fecal samples (n = 160) were collected from one-male-multifemale and all-male groups in areas with varying levels of anthropogenic disturbance, with efforts made to ensure that each sample originated from a different individual. In addition, the effects of group type, group size, and sampling location on parasite abundance were evaluated using fecal egg counts and Bayesian models. Three dominant parasite species groups (Trichuris sp., Strongyloides fuelleborni, and Oesophagostomum aculeatum) with an overall infection prevalence of 81.25% were identified. Results showed that group type did not significantly affect parasite abundance. However, group size showed a positive correlation with the abundance of Trichuris sp. and a negative correlation with S. fuelleborni and O. aculeatum. In addition, our models revealed that the infection load of Trichuris sp. decreased with increasing distance from the river mouth, which was used as a proxy for a disturbance gradient, whereas O. aculeatum exhibited higher infection load at greater distances, indicating lower prevalence in more disturbed downstream areas. Thus, parasite abundance in proboscis monkeys may be shaped by social and environmental factors, with taxa-specific responses likely reflecting differences in environmental persistence and transmission ecology.

ecology↗

Gut microbial community in proboscis monkeys: implications for effects of geographical and social factors

Recent technological advances have enabled comprehensive analyses of the previously uncharacterized microbial community in the gastrointestinal tracts of numerous animal species; however, the gut microbiota of several species, such as the endangered proboscis monkey (Nasalis larvatus) examined in this study, remains poorly understood. Our study sought to establish the first comprehensive data on the gut microbiota of free-ranging foregut-fermenting proboscis monkeys and to determine how their microbiota are affected locally by environmental factor, i.e. geographical distance, and social factor, i.e. number of adult females within harem groups and number of adults and subadults within non-harem groups, in a riparian forest in Sabah, Malaysian Borneo. Using 16S rRNA gene sequencing of 264 faecal samples collected from free-ranging proboscis monkeys, we demonstrated the trend that their microbial community composition is not particularly distinctive compared to other foregut and hindgut fermenting primates. The microbial alpha diversity was higher in larger groups and individuals inhabiting diverse vegetation (i.e. presumed to have a diverse diet). For microbial beta diversity, some measures were significant, showing higher values with larger geographical distances between samples. These results suggest that social factors such as increased interindividual interactions, which can occur with larger groups, as well as physical distances between individuals or differences in dietary patterns, may affect the gut microbial communities.

microbiology↗

Plastomes of Garcinia mangostana L. and comparative analysis with other Garcinia species

The two varieties of mangosteen (Garcinia mangostana L.) cultivated in Malaysia are known as Manggis and Mesta. The latter is preferred for its flavor, texture, and seedlessness. Here, we report a complete plastome (156,580 bp) of the Mesta variety which was obtained through a hybrid assembly approach using PacBio and Illumina sequencing reads. It encompasses a large single-copy (LSC) region (85,383 bp) and a small single-copy (SSC) region (17,137 bp) that are separated by 27,230 bp of inverted repeat (IR) regions at both ends. The plastome comprises 128 genes, namely 83 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The plastome of the Manggis variety (156,582 bp) obtained from reference-guided assembly of Illumina reads was found to be nearly identical to Mesta except for two indels and the presence of a single nucleotide polymorphism (SNP). Comparative analyses with other publicly available Garcinia plastomes, including G. anomala, G. gummi-gutta, G. mangostana var. Thailand, G. oblongifolia, G. paucinervis, and G. pedunculata found that the gene content, gene order, and gene orientation were highly conserved among the Garcinia species. Phylogenomic analysis divided the six Garcinia plastomes into three groups with the Mesta and Manggis varieties clustered closer to G. anomala, G. gummi-gutta, and G. oblongifolia, while the Thailand variety clustered with G. pedunculata in another group. These findings serve as future references for the identification of species or varieties and facilitate phylogenomic analysis of lineages from the Garcinia genus to better understand their evolutionary history.

plant biology↗

Mitochondrial Genome of Garcinia mangostana L. variety Mesta

Fruits of Garcinia mangostana L. (mangosteen) are rich in nutrients with xanthones found in the pericarp having great pharmaceutical potential. Mangosteen variety Mesta is only found in Malaysia, which tastes sweeter than the common Manggis variety in Southeast Asia. In this study, we report the complete mitogenome of G. mangostana L. variety Mesta with a total sequence length of 371,235 bp of which 1.7% could be of plastid origin. The overall GC content of the mitogenome is 43.8%, comprising 29 protein-coding genes, 3 rRNA genes, and 21 tRNA genes. Repeat and tandem repeat sequences accounted for 5.8% and 0.15% of the Mesta mitogenome, respectively. There are 333 predicted RNA-editing sites in Mesta mitogenome. These include the RNA-editing events that generated the start codon of nad1 gene and the stop codon of ccmFC gene. Phylogenomic analysis with a maximum likelihood method showed that the mitogenome of mangosteen variety Mesta was grouped under Malpighiales order. This is the first complete mitogenome from the Garcinia genus for future evolutionary studies.

plant biology↗

Evidence of Chelonid Herpesvirus 5 (ChHV5) in Green Turtles (Chelonia mydas) from Sabah, Borneo

Fibropapillomatosis (FP) is characterized by cutaneous tumours and is associated with Chelonid herpesvirus 5 (ChHV5), an alphaherpesvirus from the family Herpesviridae. Here, we provide the first evidence of ChHV5-associated FP in endangered Green turtles (Chelonia mydas) from Sabah, which is located at the northern region of Malaysian Borneo. The aims of this study were firstly, to determine the presence of ChHV5 in both tumour exhibiting and tumour-free turtles using molecular techniques and secondly, to determine the phylogeography of ChHV5 in Sabah. We also aim to provide evidence of ChHV5 infection through histopathological examinations. A total of 115 Green turtles were sampled from Mabul Island, Sabah. We observed three Green turtles that exhibited FP tumours and were positive for ChHV5.In addition, six clinically healthy turtles were also positive for the virus based on Polymerase Chain Reaction of three viral genes (Capsid protein gene UL18, Glycoprotein H gene UL22 and Glycoprotein B gene UL27). The prevalence of the ChHV5 was 5.22% in asymptomatic Green turtles. Epidermal intranuclear inclusions were identified in tumour lesions upon histopathological examination. Thus, the emergence of ChHV5 in Green turtle in the waters of Sabah could indicate a possible threat to sea turtle populations in the future and requires further monitoring of the populations along the Bornean coast.

genetics↗