Biology subjects

Storey, K. B.

Publications and source records attributed to Storey, K. B..

3 recordsLinked to original sources

bioRxiv2026

Dynamic Histone Lysine Methylation and Demethylation in Wood Frog (Rana sylvatica) Liver During Anoxia

Anoxia is a major stress for most vertebrates and frequently accompanies harsh winter conditions, particularly in species that spend much of the season frozen solid. North American freeze-tolerant wood frogs (Rana sylvatica) can survive several months without oxygen and endure whole-body freezing for up to eight months of the year, with [~]70% of total body water frozen as extracellular ice, yet revive when temperatures rise in spring. Survival depends on multiple adaptations, including tolerance of prolonged oxygen deprivation while frozen, when breathing and circulation are halted. A key strategy involves hepatic glycogen mobilization, producing large amounts of glucose that are distributed to tissues where it functions both as a cryoprotectant and as a substrate for anaerobic ATP production. The present study examines the role of histone lysine methylation and demethylation in regulating liver proteins under anoxic conditions. Relative protein expression of seven histone methyltransferases (ASH2L-S, ASH2L-L, RBBP5, SETD8, SMYD2, ESET, SETD1), six lysine demethylases (KDM1A, KDM3B, KDM4A, KDM4B, KDM5A, KDM5C), and eight histone marks (H3K4me1, H3K4me2, H3K9me3, H3K27me3, H3K36me3, H3K79me3, H4K20me1, H4K20me3) were evaluated in wood frog liver under control, 4-hour, and 24-hour anoxia exposures. The data indicate that histone lysine methylation and demethylation contribute significantly to transcriptional regulation under anoxia. Specifically, H3K4, H3K36, and H3K79 methylation were associated with transcriptional activation, whereas H3K9, H3K27, and H4K20 methylation correlated with transcriptional repression. These findings highlight the dynamic role of epigenetic regulation in supporting hypometabolism and stress adaptation in freeze-tolerant wood frogs.

molecular biology↗

bioRxiv2023

Consequences of directly- and indirectly-experienced heat stress in a mutagenic environment

Climate change increases the frequency and duration of heat events. Negative effects of heat stress may be exacerbated through the action of social metabolites between aquatic animals. Whilst early life stages are vulnerable to stress-induced damage, they deploy cellular mechanisms to protect cells against mutagens such as ultraviolet rays (UV). Little is known about the fate of fish embryos which have experienced heat stress in a mutagenic environment. The present study exposed zebrafish embryos to one of three stress history treatments consisting of direct heat stress (TS+UV), the social context of heat stress via social metabolites (SM+UV), and their combination in TS+SM+UV before a UVB/UVA damage/repair assay. We measured phenotypic and transcriptomic responses to these treatments, and estimated mutational damage through DNA mutation frequencies and RNA integrity values. Compared to UV-treated controls (C+UV), the social context of heat stress history preceding the UV assay altered keratin and cell structuring-related pathways, associated with longer embryos with over-developed pericardia displaying behavioural hypoactivity. Relative to C+UV, direct heat stress history preceding UV exposure had a hormetic effect by stimulating the cellular stress response and facilitating DNA repair, which rescued embryos from subsequent UV damage and improved their apparent fitness. However, heat stress combined with social metabolites overwhelmed embryos in the UV assay, which annihilated the hormetic effect, introduced mutations, and lowered their apparent fitness. Whilst generated in the laboratory, these findings provide an important baseline for understanding the consequences of heat stress history in natural environments, where heat stress occurs within a social context. HighlightsO_LIHeat stress had a hormetic effect against UV damage, by stimulating the heat shock response, antioxidants, and DNA repair. C_LIO_LIThe heat hormetic effect protected and/or rescued embryos from UV damage by reducing single nucleotide variants observed in RNA, lowering malformations, and accelerating development. C_LIO_LIHeat-stressed embryos released social metabolites that initiated keratin, immune, and cellular structuring responses in receivers, in turn increasing body sizes but without reducing UV-induced malformations. C_LIO_LIHeat combined with social metabolites overwhelmed embryos in response to UV, reducing fitness-relevant performance. C_LIO_LIHeat stress during early embryogenesis led to differential fitness-relevant outcomes showing a nonlinear relationship with stress intensity. C_LI Summary statementSublethal heat stress protects zebrafish embryos in a mutagenic environment, but this protective effect is lost when zebrafish embryos additionally stress each other via chemical cues. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=84 SRC="FIGDIR/small/560724v1_ufig1.gif" ALT="Figure 1"> View larger version (41K): org.highwire.dtl.DTLVardef@a6445org.highwire.dtl.DTLVardef@3cfc64org.highwire.dtl.DTLVardef@1de41c6org.highwire.dtl.DTLVardef@b06269_HPS_FORMAT_FIGEXP M_FIG C_FIG

ecology↗

bioRxiv2019

Abiotic environmental adaptation in vertebrates is characterized by functional genomic constraint

Understanding the genomic basis of adaptation to different abiotic environments is important for understanding organismal responses to current short-term environmental fluctuations. Using functional and comparative genomics approaches, we here investigated whether genomic adaptation to a set of environmental parameters is contingent across vertebrate genomes or, alternatively, contains an element of evolutionary constraint that would be evident through recurrent involvement of specific subsets of genes and functions in adaptation to similar environments. We first identified 200 genes with signatures of selection from transcriptomes of 24 species of lacertid lizards with known adaptations in preferred temperature, correlated with thermal environment experienced by these lizards in their range. In order to discern genes adapting to climate from other selective factors, we then performed a meta-analysis of 1100 genes with signatures of selection obtained from-omics studies in vertebrate species adapted to different abiotic environments. We found that this gene set formed a tightly connected interactome which was to 23% enriched in predicted functions of adaptation to climate and to 18% involved in organismal stress response. We found a much higher degree of recurrent use of identical genes (43.6%) and functional similarity than expected by chance, and no clear division between genes used in ectotherm and endotherm physiological strategies. 171 out of 200 genes of Lacertidae were part of this network, indicating that a comparative genomic approach can help to disentangle genes functionally related to adaptation to different abiotic environments from other selective factors. These results furthermore highlight an important role of genomic constraint in adaptation to the abiotic environment, and narrows the set of candidate markers to be used in future research on environmental adaptability related to climate change.\n\nSignificance Statement / Nontechnical summaryWhile the convergent evolution of phenotypes in similar environments is a well-studied phenomenon, the genomic basis of such common phenotypes and physiologies is still enigmatic. The prevalent notion is that re-use of the same genes to adapt to similar environments in different species is about as likely as winning the lottery - but organismal systems are also, to some extent, comparable between different species such as man and fruit fly through shared genes and gene functions. In this paper, we test whether constraint or contingency is more prevalent in genomic adaptation of vertebrates to aspects of their abiotic environment. We find evidence for strong functional constraint and stress responsiveness of the genes involved, which might help understand how currently experienced stress under changing climates may result in future adaptation.

evolutionary biology↗