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Steenkamp, E.

Publications and source records attributed to Steenkamp, E..

2 recordsLinked to original sources

Biofilm characterization in the maize pathogen, Fusarium verticillioides

Nearly all microbes, including fungal pathogens, form biofilms, which are structured communities of microbial aggregates enclosed in self-produced extracellular polymeric substances (EPS) and attached to a surface. Studying plant-associated fungal biofilms can enhance understanding of fungal biology and knowledge of the links between fungal diseases and plants. However, only a few plant-associated fungi are reported to form biofilms. This study aimed to examine the ability of a mycotoxigenic fungus of maize, Fusarium verticillioides, to form biofilms under laboratory conditions. During our investigation, F. verticillioides stationary phase cultures incubated in liquid media developed a biofilm-like pellicle with a hyphal assemblage that appears in the form of a cloudy and thin slime material. Under the microscope, the biofilms exhibited a highly heterogeneous architecture made of dense, entangled, and compact hyphae, which were accompanied by a quantifiable EPS and extracellular DNA (eDNA). The biofilm was also found to respond to different abiotic conditions including pH and temperature, suggesting their relevance in a field setting. We further demonstrate the biofilm structural maintenance role of eDNA through treatment with DNase, which was only marginally effective during late biofilm stages, suggesting that it forms complex interactions with the EPS during biofilm maturation. Based on these results, we propose that F. verticillioides forms a true biofilm that may act as a potential virulence factor.

microbiology↗

Niche preference of Escherichia coli in a peri-urban pond ecosystem

Escherichia coli comprises of diverse strains with a large accessory genome, indicating functional diversity and the ability to adapt to a range of niches. Specific strains would display greatest fitness in niches matching their combination of phenotypic traits. Given this hypothesis, we sought to determine whether E. coli in a peri-urban pond and associated cattle pasture display niche preference. Samples were collected from water, sediment, aquatic plants, water snails associated with the pond as well as bovine feces from cattle in an adjacent pasture. Isolates (120) were obtained after plating on Membrane Lactose Glucuronide Agar (MLGA). We used the uidA and mutS sequences for all isolates to determine phylogeny by maximum likelihood, and population structure through gene flow analysis. PCR was used to allocate isolates to phylogroups and to determine the presence of pathogenicity / virulence genes (stxI, stxII, eaeA, hlyA, ST and LT). Antimicrobial resistance was determined using a disk diffusion assay for Tetracycline, Gentamicin, Ciprofloxacin, Meropenem, Ceftriaxone, and Azitrhomycin. Our results showed that isolates from water, sediment and water plants were similar by phylogroup distribution, virulence gene distribution and antibiotic resistance while both snail and feces populations were significantly different. Few of the feces isolates were significantly similar to aquatic ones, and most of the snail isolates were also different. Population structure analysis indicated three genetic backgrounds associated with bovine, snail and aquatic environments. Collectively these data support niche preference of E. coli isolates occurring in this ecosystem.

microbiology↗