Biology subjects

Sreenivasan, V. K. A.

Publications and source records attributed to Sreenivasan, V. K. A..

4 recordsLinked to original sources

bioRxiv2024

Astrocytes in the mouse suprachiasmatic nuclei respond directly to glucocorticoids feedback

The circadian timing system anticipates daily recurring changes in the environment to synchronize physiology. In mammals, the master pacemaker is the hypothalamic suprachiasmatic nuclei (SCN), which synchronizes "wake" functions by inducing the circadian release of Glucocorticoids (GCs) from the adrenal gland. GCs peak right before the active phase and set the time of peripheral clocks, however, it is still unclear whether the SCN respond to GCs feedback. While GCs influence directly the SCN during the perinatal period, the adult circuit is considered to be resistant to them, suggesting a reduction of GCs-sensitivity along development. To understand this mechanism, we followed the expression of GC receptor (GR) along mouse SCN development with single-cell resolution and show that GR is up-regulated in astrocytes as the circuit matures. We provide in vivo and in vitro evidence that the adult SCN stays responsive to circulating GCs through the activation of GR in astrocytes. Astrocytes communication is necessary to induce the GC-dependent shift on the SCN clock. Our data provides insight into the development of the SCN and highlight a new role of astrocytes as time-keepers in the adult. This finding might shed light on how the circadian system adapts to jetlag or shift work.

developmental biology↗

bioRxiv2022

Single cell, whole embryo phenotyping of pleiotropic disorders of mammalian development

Mouse models are a critical tool for studying human diseases, particularly developmental disorders, as well as for advancing our general understanding of mammalian biology. However, it has long been suspected that conventional approaches for phenotyping are insufficiently sensitive to detect subtle defects throughout the developing mouse. Here we set out to establish single cell RNA sequencing (sc-RNA-seq) of the whole embryo as a scalable platform for the systematic molecular and cellular phenotyping of mouse genetic models. We applied combinatorial indexing-based sc-RNA-seq to profile 101 embryos of 26 genotypes at embryonic stage E13.5, altogether profiling gene expression in over 1.6M nuclei. The 26 genotypes include 22 mouse mutants representing a range of anticipated severities, from established multisystem disorders to deletions of individual enhancers, as well as the 4 wildtype backgrounds on which these mutants reside. We developed and applied several analytical frameworks for detecting differences in composition and/or gene expression across 52 cell types or trajectories. Some mutants exhibited changes in dozens of trajectories (e.g., the pleiotropic consequences of altering the Sox9 regulatory landscape) whereas others showed phenotypes affecting specific subsets of cells. We also identify differences between widely used wildtype strains, compare phenotyping of gain vs. loss of function mutants, and characterise deletions of topological associating domain (TAD) boundaries. Intriguingly, even among these 22 mutants, some changes are shared by heretofore unrelated models, suggesting that developmental pleiotropy might be "decomposable" through further scaling of this approach. Overall, our findings show how single cell profiling of whole embryos can enable the systematic molecular and cellular phenotypic characterization of mouse mutants with unprecedented breadth and resolution.

genomics↗

bioRxiv2018

Electromechanics and Volume Dynamics in Non-excitable Tissue Cells

Cell volume regulation is fundamentally important in phenomena such as cell growth, proliferation, tissue homeostasis and embryogenesis. How the cell size is set, maintained, and changed over a cells lifetime is not well understood. In this work we focus on how the volume of non-excitable tissue cells is coupled to the cell membrane electrical potential and the concentration of membrane-permeable ions in the cell environment. Specifically, we demonstrate that a sudden cell depolarization using the whole cell patch clamp results in a 30 percent increase in cell volume, while hyperpolarization results in a slight volume decrease. We find that cell volume can be partially controlled by changing the chloride or the sodium/potassium concentrations in the extracellular environment while maintaining a constant external osmotic pressure. Depletion of external chloride leads to a volume decrease in suspended HN31 cells. Introducing cells to a high potassium solution causes volume increase by up to 50%. Cell volume is also influenced by cortical tension: actin depolymerization leads to cell volume increase. We present an electrophysiology model of water dynamics driven by changes in membrane potential and in the concentration of permeable ions in the cell surrounding. The model quantitatively predicts that the cell volume is determined by the total amount of intracellular ion and protein content.

biophysics↗

bioRxiv2017

Catch-slip behavior observed upon rupturing membrane-cytoskeleton bonds

Cells are capable of cytoskeleton remodeling in response to environmental cues at the plasma membrane. The propensity to remodel in response to a mechanical stimulus is reflected in part by the lifetime of the membrane-cytoskeleton bonds upon application of a tensile loading rate. We measure the lifetime and force to rupture membrane-cytoskeleton linkages of a head and neck squamous cell carcinoma (HNSCC) cell line, HN-31 by applying a tensile loading rate (< 60 pN/s) with a handle bound to a cell, while monitoring the displacement of the handle at 2 kHz after averaging. We observe the lifetime increases with loading rate, rf to a maximum after which it decreases with further increase in rf. This biphasic relationship appears insensitive to drugs that target microtubule assembly, but is no longer detectable, i.e., lifetime is independent of rf in cells with reduced active Rho-GTPases. The loading rate-time relationship resembles catch-slip behavior reported upon applying tensile loads to separate protein complexes. Under small loads the bonds catch to increase lifetimes, under larger loads their lifetime shortens and they dissociate in a slip-like manner. Our data conforms to a model that considers the membrane-cytoskeleton bonds exhibit a load-dependent conformational change and dissociate via two pathways. We also find the membrane-cytoskeleton linkages strengthen with stationary compressive load, FSC (|FSC| < 40 pN), and conclude this metastatic cell line responds to small mechanical stimuli by promoting cytoskeleton remodeling as evident by observing F-actin within the membrane nanotube (10 {micro}m length) formed after bond rupture.

biophysics↗