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Sowa, D. J.

Publications and source records attributed to Sowa, D. J..

2 recordsLinked to original sources

Translesion synthesis protein ImuA from Mycolicibacterium smegmatis is a hexameric helicase-nuclease

Translesion DNA synthesis (TLS) enables DNA replication across damaged DNA and promotes stress-induced mutagenesis that contributes to antibiotic resistance in bacteria. The conserved ImuABC mutasome is essential for TLS in many bacterial species, yet the molecular function of its accessory protein, ImuA, has remained elusive. Here we show that Mycolicibacterium smegmatis ImuA assembles into a hexameric complex, likely arranged as a dimer of trimers, with dual enzymatic activities that reshape current models of its role in DNA damage tolerance. We show that ImuA functions as an ATP-dependent helicase that preferentially unwinds DNA substrates containing single-stranded DNA overhangs and identify amino acids required for both hexamer formation and helicase activity. Unexpectedly, ImuA also possesses ATP-independent 5' exonuclease activity, selectively processing ssDNA substrates with free 5' ends. We show a basic patch on the N-terminus is essential for stabilizing both the nuclease motif and oligomerization. Together, these findings identify ImuA as an active DNA-processing enzyme rather than a passive accessory factor and establish oligomerization as a prerequisite for its function. Our work provides a mechanistic framework for understanding how ImuA may function within the ImuABC mutasome to coordinate DNA processing during translesion synthesis.

biochemistry↗

The Mycobacterium tuberculosis Ku C-terminus orchestrates LigD activity through domain-specific interactions

Bacterial non-homologous end joining (NHEJ) is a DNA double-strand break (DSB) repair pathway that relies on the Ku-LigD complex to alleviate genomic instability. The Mycobacterium tuberculosis Ku C-terminus has been highlighted for its role in LigD recruitment to DNA DSBs and stimulation of ligase activity. However, it remains unclear how the Ku C-terminus interacts with and potentially influences other LigD activities. Here, we combine NMR spectroscopy, structural modelling and mutational analysis to define the interaction interface between the Ku C-terminus and LigD. We identify critical residues in Ku (E246, V248, S258, K260, and N266) and the LigD polymerase (D162, V194, R198) and ligase (D522, K579, L580) domains that mediate this interaction. Functional assays reveal that Ku stimulates LigD ligase activity through contacts with both polymerase and ligase domains, while Ku attenuates template-dependent polymerase activity, contrasting previous studies with Pseudomonas aeruginosa homologs. Disrupting the Ku-LigD interface, either through Ku or LigD mutations, abolishes ligase stimulation and restores polymerase activity, highlighting a dual regulatory mechanism. Our data supports a model where Kus C-terminal region forms a bipartite interface with LigD to balance repair activity. These findings provide mechanistic insight into the Ku-LigD repair mechanism and uncovers species-specific differences in bacterial NHEJ. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=81 SRC="FIGDIR/small/693941v2_ufig1.gif" ALT="Figure 1"> View larger version (20K): org.highwire.dtl.DTLVardef@802e3org.highwire.dtl.DTLVardef@1f5ac14org.highwire.dtl.DTLVardef@1f46677org.highwire.dtl.DTLVardef@7312b5_HPS_FORMAT_FIGEXP M_FIG C_FIG

biochemistry↗