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Sotomayor, B.

Publications and source records attributed to Sotomayor, B..

2 recordsLinked to original sources

Discovery of a single-subunit oligosaccharyltransferase that enables glycosylation of full-length IgG antibodies in Escherichia coli

Human immunoglobulin G (IgG) antibodies are one of the most important classes of biotherapeutic agents and undergo glycosylation at the conserved N297 site in the CH2 domain, which is critical for IgG Fc effector functions and anti-inflammatory activity. Hence, technologies for producing authentically glycosylated IgGs are in high demand. While attempts to engineer Escherichia coli for this purpose have been described, they have met limited success due in part to the lack of available oligosaccharyltransferase (OST) enzymes that can install N-linked glycans within the QYNST sequon of the IgG CH2 domain. Here, we identified a previously uncharacterized single-subunit OST (ssOST) from the bacterium Desulfovibrio marinus that exhibited greatly relaxed substrate specificity and, as a result, was able to catalyze glycosylation of native CH2 domains in the context of both a hinge-Fc fragment and a full-length IgG. Although the attached glycans were bacterial in origin, conversion to a homogeneous, asialo complex-type G2 N-glycan at the QYNST sequon of the E. coli-derived hinge-Fc was achieved via chemoenzymatic glycan remodeling. Importantly, the resulting G2-hinge-Fc exhibited strong binding to human Fc{gamma}RIIIa (CD16a), one of the most potent receptors for eliciting antibody-dependent cellular cytotoxicity (ADCC). Taken together, the discovery of a unique ssOST from D. marinus provides previously unavailable biocatalytic capabilities to the bacterial glycoprotein engineering toolbox and opens the door to using E. coli for the production and glycoengineering of human IgGs and fragments derived thereof.

synthetic biology↗

Optogenetic stimulation reveals frequency-dependent resonance and encoding in V1 excitatory and inhibitory neurons

Cortical information processing is thought to be facilitated by the resonant properties of individual neurons and neuronal networks, which selectively amplify inputs at specific frequencies. We used optogenetics to test how different input frequencies are encoded by excitatory cells and parvalbumin-expressing (PV) interneurons in mouse V1. Spike phase-locking and power increased with frequency, reaching a broad peak around 80-100Hz. This effect was observed only for Chronos, a fast-kinetic opsin, but not for Channelrhodopsin-2. Surprisingly, neurons did not exhibit narrow-band resonance in specific frequency-ranges, and showed reliably phase-locking up to 140Hz. Strong phase-locking at high frequencies reflected non-linear input/output transformations, with neurons firing only in a narrow part of the cycle. By contrast, low-frequency inputs were encoded in a more continuous manner. Correspondingly, spectral coherence and firing rates showed little dependence on frequency and did not reflect transferred power. To investigate whether strong phase-locking facilitated the reliable encoding of inputs, we analyzed various spike-train distances and Fano factor. Interestingly, responses to lower rather than higher frequencies had more globally reliable spike-counts and timing structure. These findings have various practical implications for understanding the effects of optogenetic stimulation and choice of opsin. Furthermore, they show both PV and excitatory neurons respond with more local precision, i.e. phase-locking, to high-frequency inputs, but have more globally reliable responses to low-frequency inputs, suggesting differential coding regimes for these frequencies.

neuroscience↗