Search bioRxiv⌕ Search

Biology subjects

Smith, D. M.

Publications and source records attributed to Smith, D. M..

61 records · Page 4Linked to original sources

Context-dependent odor learning requires the anterior olfactory nucleus

Learning to associate the context in which a stimulus occurs is an important aspect of animal learning. We propose that the association of an olfactory stimulus with its multisensory context is mediated by projections from ventral hippocampal networks (vHC) to the anterior olfactory nucleus (AON). Using a contextually-cued olfactory discrimination task, rats were trained to associate two olfactory stimuli with different responses depending on visuo-spatial context. Temporary lesions of the AON or vHC impaired performance on this task. In contrast, such lesions did not impair performance on a non-contextual olfactory discrimination task. Moreover, vHC lesions also impaired performance on an analogous contextually-cued texture discrimination task, whereas AON lesions affected only olfactory contextual associations. We describe a distinct role for the AON in olfactory processing, and conclude that early olfactory networks such as the olfactory bulb and AON function as multimodal integration networks rather than processing olfactory signals exclusively. Significance statementContextual information has long been known to play a key role in cognitive functions such as memory and decision making. We here show the contextual modulation of neural information in early primary sensory networks and its effects on contextually conditional learned behavior. We propose that projections from ventral hippocampus to anterior olfactory nucleus convey contextual information to the early olfactory system, modulating sensory representations and olfactory perception. Using behavioral pharmacology and computational modeling, we show how established network structures can mediate multimodal information and use context to make olfactory decisions.

neuroscience↗

HIV Care Prioritization using Phylogenetic Branch Length

AO_SCPLOWBSTRACTC_SCPLOWIn HIV epidemics, the structure of the transmission network can be dictated by just a few individuals. Public health intervention, such as ensuring people living with HIV adhere to antiretroviral therapy (ART) and are continually virally-suppressed, can help control the spread of the virus. However, such intervention requires utilizing the limited public health resource allocations. As a result, the ability to determine which individuals are most at-risk of transmitting HIV could allow public health officials to focus their limited resources on these individuals. Molecular epidemiology suggests an approach: prioritizing people living with HIV based on patterns of transmission inferred from their sampled viral sequences. In this paper, we introduce ProACT (Prioritization using AnCesTral edge lengths), a phylogenetic approach for prioritizing individuals living with HIV. ProACT uses a simple idea: ordering individuals by their terminal branch length in the phylogeny of their virus. In simulations and also on a dataset of HIV-1 subtype B pol sequences obtained in San Diego, we show that this simple strategy improves the effectiveness of prioritization compared to state-of-the-art methods that rely on monitoring the growth of transmission clusters defined based on genetic distance.

bioinformatics↗

EPS8 facilitates uncoating of influenza A virus

All viruses balance interactions between cellular machinery co-opted to support replication and host factors deployed to halt the infection. We used gene correlation analysis to perform an unbiased screen for host factors involved in influenza A virus (FLUAV) infection. Our screen identified the cellular factor epidermal growth factor receptor pathway substrate 8 (EPS8) as the highest confidence pro-viral candidate. Knockout and overexpression of EPS8 confirmed its importance in enhancing FLUAV infection and titers. Loss of EPS8 did not affect virion attachment, uptake, or fusion. Rather, our data show that EPS8 specifically functions during virion uncoating. EPS8 physically associated with incoming virion components, and subsequent nuclear import of released ribonucleoprotein complexes was significantly delayed in the absence of EPS8. Our study identified EPS8 as a host factor important for uncoating, a crucial step of FLUAV infection during which the interface between the virus and host is still being discovered.

microbiology↗

Prefrontal-posterior coupling mediates emotion transitions and their influence on executive function

Although emotions often result from dynamic experiences with self-regulation unfolding over time, most research has focused on responses to affective stimuli from a rather static perspective. We studied and analyzed emotion transitions, attempting to reveal brain functions related to affect dynamics. EEG responses were examined during exposure to stable versus changing emotion-eliciting images (static vs dynamic conditions) plus their impact on executive function (EF) assessed with the flanker task. During dynamic conditions, reduced prefrontal to posterior EEG coherence in the beta frequency band and greater left frontal activity occurred compared to the static conditions. Among individuals suffering higher chronic stress, subsequent EF was hindered after dynamic conditions. Furthermore, the adverse effects of emotion transitions on EF for more chronically stressed individuals were mediated by prefrontal-posterior coherence in low beta frequency band during emotional image sequences. Emotion appears to influence EF through changes in large-scale synchronization. Individuals high in chronic stress are vulnerable to these effects.

neuroscience↗

Mechanism of action of methotrexate against Zika virus

Zika virus (ZIKV), which is associated with microcephaly in infants and Guillain-Barre syndrome, reemerged as a serious public health threat in Latin America in recent years. Previous high-throughput screening (HTS) campaigns have revealed several potential hit molecules against ZIKV, including methotrexate (MTX), which is clinically used as an anti-cancer chemotherapy and anti-rheumatoid agent. We studied the mechanism of action of MTX against ZIKV in relation to its inhibition of dihydrofolate reductase (DHFR) in vitro using Vero and human neural stem cells (hNSCs). As expected, an antiviral effect for MTX against ZIKV was observed, showing up to ten-fold decrease in virus titer during MTX treatment. We also observed that addition of leucovorin (a downstream metabolite of DHFR pathway) rescued the ZIKV replication impaired by MTX treatment in ZIKV-infected cells, explaining the antiviral effect of MTX through inhibition of DHFR. We also found that addition of adenosine to ZIKV-infected cells was able to rescue ZIKV replication inhibited by MTX, suggesting that restriction of de novo synthesis adenosine triphosphate (ATP) pools suppresses viral replication. These results confirm that the DFHR pathway can be targeted to inhibit replication of ZIKV, similar to other published results showing this effect in related flaviviruses.

microbiology↗

Hippocampal State Transitions at the Boundaries between Trial Epochs

The hippocampus encodes distinct environmental and behavioral contexts with unique patterns of activity. Representational shifts with changes in the context, referred to as remapping, have been extensively studied. However, less is known about the nature of transitions between representations. In this study, we leverage a large dataset of 2056 neurons recorded while rats performed an olfactory memory task with a predictable temporal structure involving trials and inter-trial intervals, separated by salient boundaries at the trial start and trial end. We found that trial epochs were associated with stable hippocampal population representations, despite moment to moment variability in stimuli and behavior. Representations of trial and inter-trial interval epochs were far more distinct than spatial factors would predict and the transitions between the two were abrupt, with a sharp boundary suggestive of a dynamic shift in the representational state. This boundary was associated with a large spike in multi-unit activity, with many individual cells specifically active at the start or end of each trial. Both epochs and boundaries were encoded by hippocampal populations, and these representations carried information on orthogonal axes readily identified using principal component analysis. We suggest that the activity spike at trial boundaries might serve to drive hippocampal activity from one stable state to another, and may play a role in segmenting continuous experience into discrete episodic memories.

neuroscience↗

Retrosplenial cortical representations of space and future goal locations develop with learning

The retrosplenial cortex (RSC) is important for long-term contextual memory and spatial navigation, but little is known about how RSC neural representations develop with experience. We recorded neuronal activity in the RSC of rats as they learned a continuous spatial alternation task and found that the RSC slowly developed a population-level representation of the rats spatial location and current trajectory to the goal. After the rats reached peak performance, RSC firing patterns became predictive of navigation accuracy and even began to represent the upcoming goal location as the rats approached the choice point. These neural representations emerged at the same time that lesions impaired performance, suggesting that the RSC gradually acquired task representations that contribute to navigational decision-making.

neuroscience↗