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Biology subjects

Smelser, A.

Publications and source records attributed to Smelser, A..

2 recordsLinked to original sources

Mechanotransduction tuned by intermediate filaments promotes DNA repair in stiff environments

High mammographic density increases breast cancer risk. Dense tissues are rich in fibrillar collagen, forming a rigid extracellular matrix around the epithelium. Although cancer initiation and progression are closely tied to DNA damage and to the DNA damage response, if and how tissue stiffness affects genome maintenance is not fully elucidated. We found that repair factor recruitment is more efficient, and that DNA breaks are repaired faster by cells on rigid substrates. Mechanistically, hemidesmosomal integrins, intermediate filaments, the LINC complex, and YAP are key mediators of this mechanogenomic response. Rigid tissue contexts favor survival of cells with DNA damage, which may lead to the accumulation of somatic mutations, as identified here with RNAseq analyses of normal breast tissue. Our findings provide new insights into how tissue rigidity influences cancer risk.

cell biology↗

Structured illumination to spatially map chromatin motions

We describe a simple optical method that creates structured illumination of a photoactivatable probe and apply this method to characterize chromatin motions in the nuclei of live cells. A laser beam coupled to a diffractive optical element at the back focal plane of an excitation objective generates an array of near diffraction-limited beamlets with FWHM of 340{+/-}30 nm, which simultaneously photoactivate a 7x7 matrix pattern of GFP-labeled histones, with spots 1.70 m apart. From the movements of the photoactivated spots, we map chromatin diffusion coefficients at multiple microdomains of the cell nucleus. The results show correlated motions of nearest chromatin microdomain neighbors, whereas chromatin movements are uncorrelated at the global scale of the nucleus. The method also reveals DNA damage-dependent decrease in chromatin diffusion. The DOE instrumentation can easily and cheaply be implemented on commercial inverted fluorescence microscopes to analyze adherent cell culture models. A protocol to measure chromatin motions in non-adherent human hematopoietic stem and progenitor cells is also described. We anticipate that the method will contribute to the identification of the mechanisms regulating chromatin mobility, which influences most genomic processes and may underlie the biogenesis of genomic translocations associated with hematologic malignancies.

cell biology↗