Biology subjects

Smedley, M. A.

Publications and source records attributed to Smedley, M. A..

4 recordsLinked to original sources

bioRxiv2025

Controlling GRF4-GIF1 Expression for Efficient, Genotype-Independent Transformation Across Wheat Cultivars

Bread wheat (Triticum aestivum L.) plays a vital role in global food security, and its continuous genetic improvement is essential to meet the demands of a rapidly growing world population. Advances in genome sequencing and assembly have positioned wheat as a model crop for functional genomics and have increased the demand for highly efficient, genotype-independent transformation systems. A fusion technology involving a GROWTH-REGULATING FACTOR (GRF) and a GRF-INTERACTING FACTOR (GIF) has emerged as a powerful tool to enhance regeneration efficiency and expand the range of transformable genotypes. In this study, we present an optimized and robust Agrobacterium-mediated wheat transformation protocol incorporating GRF4-GIF1, tested across multiple wheat varieties. Across all tested wheat cultivars, GRF4-GIF1 containing constructs consistently enabled successful transformation, with varied efficiencies depending on the genotype and promotors used to drive the gene fusion. Our method significantly improves transformation efficiency while minimizing GRF4-GIF1 pleiotropic effects, providing a versatile platform for gene function analysis and gene editing. This work represents a critical step toward efficient, genotype-independent transformation in wheat, supporting both research and breeding applications aimed at improving crop resilience, nutritional value, and productivity.

plant biology↗

bioRxiv2023

An improved Nicotiana benthamiana bioproduction chassis provides novel insights into nicotine biosynthesis

The model plant Nicotiana benthamiana is an increasingly attractive organism for the production of high-value, biologically active molecules. However, N. benthamiana accumulates high levels of pyridine alkaloids, in particular nicotine, which complicates the downstream purification processes. Here, we report the assembly of an improved N. benthamiana genome as well as the generation of low-nicotine lines by CRISPR/Cas9-based inactivation of berberine bridge enzyme-like proteins (BBLs). Triple as well as quintuple mutants accumulated 3-4 times less nicotine than the respective control lines. The availability of lines without functional BBLs allowed us to probe their catalytic role in nicotine biosynthesis, which has remained obscure. Notably, chiral analysis revealed that the enantiomeric purity of nicotine was fully lost in the quintuple mutants. In addition, precursor feeding experiments showed that these mutants cannot facilitate the specific loss of C6 hydrogen that characterizes natural nicotine biosynthesis. Our work delivers an improved N. benthamiana chassis for bioproduction and opens the possibility that BBLs are the sought-after coupling enzymes in nicotine biosynthesis.

plant biology↗

bioRxiv2021

Evolution of the bread wheat D-subgenome and enriching it with diversity from Aegilops tauschii

Aegilops tauschii, the diploid wild progenitor of the D-subgenome of bread wheat, constitutes a reservoir of genetic diversity for improving bread wheat performance and environmental resilience. To better define and understand this diversity, we sequenced 242 Ae. tauschii accessions and compared them to the wheat D-subgenome. We characterized a rare, geographically-restricted lineage of Ae. tauschii and discovered that it contributed to the wheat D-subgenome, thereby elucidating the origin of bread wheat from at least two independent hybridizations. We then used k-mer-based association mapping to identify discrete genomic regions with candidate genes for disease and pest resistance and demonstrated their functional transfer into wheat by transgenesis and wide crossing, including the generation of a library of synthetic hexaploids incorporating diverse Ae. tauschii genomes. This pipeline permits rapid trait discovery in the diploid ancestor through to functional genetic validation in a hexaploid background amenable to breeding.

plant biology↗

bioRxiv2018

The wheat Sr22, Sr33, Sr35 and Sr45 genes confer resistance against stem rust in barley

In the last 20 years, stem rust caused by the fungus Puccinia graminis f. sp. tritici (Pgt), has re-emerged as a major threat to wheat and barley cultivation in Africa and Europe. In contrast to wheat with 82 designated stem rust (Sr) resistance genes, barleys genetic variation for stem rust resistance is very narrow with only seven resistance genes genetically identified. Of these, only one locus consisting of two genes is effective against Ug99, a strain of Pgt which emerged in Uganda in 1999 and has since spread to much of East Africa and parts of the Middle East. The objective of this study was to assess the functionality, in barley, of cloned wheat Sr genes effective against Ug99. Sr22, Sr33, Sr35 and Sr45 were transformed into barley cv. Golden Promise using Agrobacterium-mediated transformation. All four genes were found to confer effective stem rust resistance. The barley transgenics remained susceptible to the barley leaf rust pathogen Puccinia hordei, indicating that the resistance conferred by these wheat Sr genes was specific for Pgt. Cloned Sr genes from wheat are therefore a potential source of resistance against wheat stem rust in barley.

plant biology↗