Biology subjects

Situmorang, A.

Publications and source records attributed to Situmorang, A..

5 recordsLinked to original sources

bioRxiv2026

IDENTIFICATION OF CANDIDATE GENES UNDERLYING A NOVEL QTL FOR ROOT LENGTH AND DIAMETER IN BARLEY IN RESPONSE TO SALINITY

Salinity is a major agricultural problem that decreases growth and yield of crops and is expected to worsen with climate change. Improving salt tolerance through breeding could be facilitated by identification of genetic loci and candidate genes affecting root traits that enhance water and nutrient uptake while limiting accumulation of toxic ions. In this study, a Clipper x Sahara 3771 doubled haploid (DH) barley mapping population was screened for root growth responses to saline conditions in a controlled environment. Quantitative trait loci (QTLs) were mapped for root traits including seminal root length, root diameter and root potassium. Major QTLs affecting seminal root length and average root diameter were detected in the distal region of the short arm of chromosome 2H, indicating that this region is a key determinant of root architecture under both control and saline conditions. The linkage map was improved by using newly designed assays for SNPs on chromosome 2H and a 2.5-Mb interval was identified for investigation of candidate genes. Bulked segregant RNA sequencing (BSR-Seq) of contrasting salt-tolerant and salt-sensitive DH lines identified differentially expressed genes associated with root growth maintenance and ion homeostasis in root tips. These findings identify specific region on chromosome 2H as a major genomic region affecting barley root architecture, especially under saline conditions, and identify differentially expressed candidate genes in that region.

plant biology↗

bioRxiv2020

Diverse roles of MAX1 homologues in rice

Cytochrome P450 enzymes encoded by MORE AXILLARY GROWTH1 (MAX1)-like genes produce most of the structural diversity of strigolactones during the final steps of strigolactone biosynthesis. The diverse copies of MAX1 in Oryza sativa provide a resource to investigate why plants produce such a wide range of strigolactones. Here we performed in silico analyses of transcription factors and microRNAs that may regulate each rice MAX1, and compared the results with available data about MAX1 expression profiles and genes co-expressed with MAX1 genes. Data suggest that distinct mechanisms regulate the expression of each MAX1. Moreover, there may be novel functions for MAX1 homologues, such as the regulation of flower development or responses to heavy metals. In addition, individual MAX1s could be involved in specific functions, such as the regulation of seed development or wax synthesis in rice. Our analysis reveals potential new avenues of strigolactone research that may otherwise not be obvious.

plant biology↗

bioRxiv2020

A single nucleotide substitution in TaHKT1;5-D controls shoot Na+ accumulation in bread wheat

Improving salinity tolerance in the most widely cultivated cereal, bread wheat (Triticum aestivum L.), is essential to increase grain yields on saline agricultural lands. A Portuguese landrace, Mocho de Espiga Branca accumulates up to 6 folds greater leaf and sheath sodium (Na+) than two Australian cultivars, Gladius and Scout, under salt stress. Despite high leaf and sheath Na+ concentrations, Mocho de Espiga Branca maintained similar salinity tolerance compared to Gladius and Scout. A naturally occurring single nucleotide substitution was identified in the gene encoding a major Na+ transporter TaHKT1;5-D in Mocho de Espiga Branca, which resulted in a L190P amino acid residue variation. This variant prevents Mocho de Espiga Branca from retrieving Na+ from the root xylem leading to a high shoot Na+ concentration. The identification of the tissue tolerant Mocho de Espiga Branca will accelerate the development of more elite salt tolerant bread wheat cultivars.

plant biology↗

bioRxiv2020

A Grain of Salt

We quantified grain sodium (Na+) content across a barley GWAS panel grown under optimal conditions. We identified a strong association with a region containing two low and one high Na+ accumulating haplotypes of a Class 1 HIGH-AFFINITY POTASSIUM TRANSPORTER (HKT1;5) known to be involved in regulating plant Na+ homeostasis. The haplotypes exhibited an average 1.8-fold difference in grain Na+ content. We show that an L189P substitution disrupts Na+ transport in the high Na+ lines, disturbs the plasma membrane localisation typical of HKT1;5 and induces a conformational change in the protein predicted to compromise function. Under NaCl stress, lines containing P189 accumulate high levels of Na+, but show no significant difference in biomass. P189 increases in frequency from wild-species to elite cultivars leading us to speculate that the compromised haplotype is undergoing directional selection possibly due to the value of Na+ as a functional nutrient in non-saline environments.

genetics↗

bioRxiv2020

Endomembrane Cation Chloride Cotransporters (CCC1s) modulate endo- and exocytosis

Plant cells maintain a low luminal pH in the Trans-Golgi-Network/Early Endosome (TGN/EE), the organelle in which the secretory and endocytic pathways intersect. Impaired TGN/EE pH regulation translates into severe plant growth defects. The identity of the proton pump and proton/ion antiporters that regulate TGN/EE pH have been determined, but an essential component required to complete the TGN/EE membrane transport circuit remains unidentified - a pathway for cation and anion efflux. Here, we have used complementation, genetically encoded fluorescent sensors, and pharmacological treatments to demonstrate that the TGN/EE localised Arabidopsis Cation Chloride Cotransporter (CCC1) is this missing component necessary for regulating TGN/EE pH and function. Loss of CCC1 function leads to alterations in TGN/EE-mediated processes including endo- and exocytosis, and trafficking to the vacuole, and response to abiotic stress, consistent with the multitude of phenotypes observed in ccc1 knockout plants. This discovery places CCC1 as a central component of plant cellular function.

plant biology↗