Biology subjects

Simon, Z. D.

Publications and source records attributed to Simon, Z. D..

3 recordsLinked to original sources

bioRxiv2025

Differential age effects on functional network development link to contextual memory disruption in APOE4 versus APOE3 homozygous mice

Apolipoprotein-{varepsilon}4 (APOE4) homozygosity is the strongest genetic risk-factor for Alzheimers Disease (AD). The combined effects of APOE4 with age on the brain are unclear. In the present work, we tested the hypothesis that age alters contextual fear memory, functional network topology, diffusion imaging measures, and RNA expression differentially between APOE4 and APOE3 homozygous mice. Male and female mice, 1.5-5.5 month (young) and 9-13.5 month (adult), homozygous for human APOE4 or APOE3, were scanned using an 11.1 Tesla MRI scanner. Functional magnetic resonance imaging (fMRI) and diffusion tensor imaging (DTI) were performed, and images were processed and analyzed, followed by a contextual fear conditioning (CFC) protocol to test contextual memory. Functional imaging revealed decreases in various functional network measures and decreased network development for APOE4 adults as well as significant differences between groups in brain activity in motor, sensory, memory, and emotional processing related regions. APOE3 adult mice showed increasing network complexity with aging. DTI-based fractional anisotropy (FA) increased with age independent of genotype. Behaviorally APOE4 adult mice experienced contextual memory dysfunction relative to other groups. No sex differences were observed. The results suggest that in APOE4 adult mice there may be a link of network connectivity changes with increases in fear behavior and a decreased ability to recognize contextual changes. Furthermore, the lack of network development in aging APOE4 mice is indicative of a loss of functional network resilience in the brains of AD-susceptible individuals.

neuroscience↗

bioRxiv2024

Sex dependent effects of amyloidosis on functional network hub topology is associated with downregulated neuronal gene signatures in the APPswe/PSEN1dE9 double transgenic mouse

BackgroundExtracellular amyloid-{beta} (A{beta}) impairs brain-wide functional connectivity, although mechanisms linking A{beta} to broader functional network connectivity remain elusive. ObjectiveHere, we evaluated the effect of A{beta} on fear memory and functional connectome measures in mice. MethodsMiddle-aged (9-11 months of age) double transgenic APP-PS1 mice and age and sex-matched controls were evaluated on a fear conditioning protocol and then imaged at 11.1 Tesla. Brains were harvested and processed for analysis of A{beta} plaques and Iba1 immunolabeling in cortex, hippocampus, and basolateral amygdala. Additional RNA sequencing data from separate age, strain, and sex matched mice were analyzed for differentially expressed genes (DEGs) and weighted gene co-expression networks. ResultsIn both male and female mice, we observed increased functional connectivity in a dorsal striatal/amygdala network due to A{beta}. Increased functional connectivity within this network was matched by increases in A{beta}PP gene expression, A{beta} and Iba1 immunolabeling, and an upregulated cluster of DEGs involved in the immune response. Conversely, the network measure representing node hubness, eigenvector centrality, was increased in prefrontal cortical brain regions, but only in female APP-PS1 mice. This female specific-effect of amyloid was associated with downregulation of a cluster of DEGs involved in cortical and striatal GABA transmission, anxiogenic responses, and motor activity, in female APP-PS1 mice, but not males. ConclusionsOur results contribute to a growing literature linking between A{beta}, immune activation and functional network connectivity. Furthermore, they reveal effects of A{beta} on gene expression patterns in female mice that may contribute to amyloidosis-induced dysregulation of non-cognitive circuitry.

neuroscience↗

bioRxiv2024

A comparative analysis of Parkinson's disease and inflammatory bowel disease gut microbiomes highlights shared depletions in key butyrate-producing bacteria

Epidemiological studies reveal that a diagnosis of inflammatory bowel disease (IBD) is associated with an increased risk of developing Parkinsons disease (PD). The presence of gut dysbiosis has been documented in both PD and IBD patients, however it is currently unknown how alterations in the gut microbiome may contribute to the epidemiological link between both diseases. To identify shared and distinct features of the PD and IBD microbiome, we performed the first joint analysis of 54 PD, 26 IBD, and 16 healthy control gut metagenomes recruited from clinics at the University of Florida, and directly compared the gut microbiomes from PD and IBD persons. Larger, publicly available PD and IBD metagenomic datasets were also analyzed to validate and extend our findings. Depletions in short-chain fatty acid (SCFA) producing bacteria, including Roseburia intestinalis, Faecalibacterium prausnitzii, Anaerostipes hadrus, and Eubacterium rectale, as well as depletions in SCFA synthesis pathways, were demonstrated across PD and IBD datasets. We posit that direct comparison of PD and IBD gut microbiomes will be important in identifying features within the IBD gut which may be associated with PD. The data revealed a consistent depletion in SCFA-producing bacteria across both PD and IBD, suggesting that loss of these microbes may influence the pathophysiology of both disease states.

neuroscience↗