Biology subjects

Simmons, N. B.

Publications and source records attributed to Simmons, N. B..

At least 19 recordsLinked to original sources

bioRxiv2026

Novel modifications to fructose metabolism are associated with adaptation to high-sugar diets in bats

High-sugar diets in mammals are associated with a number of metabolic diseases including diabetes and obesity. However, frugivorous and nectivorous bats specialize in consuming diets high in simple sugars while remaining healthy. To investigate the metabolic adaptations in bats with high-sugar diets, we conducted targeted metabolomics on blood samples collected during the first ten minutes after glucose or fructose feeding in five bat species whose natural diets vary in sugar content. By comparing changes in blood metabolite levels over time both between feeding treatments and across dietary guild, we have been able to identify shifts in sugar processing that likely support the healthy metabolism of simple sugars mammals with high-sugar diets. Notably, despite both sugars being readily absorbed, only fructose feeding induced significant changes in other metabolites within ten minutes after feeding. Species who naturally consume more sugar showed both faster production of metabolic intermediates and lowered production of common deleterious byproducts of fructose metabolism than species with comparatively lower-sugar diets. The prioritization and refinement of fructose metabolism is therefore likely a more key aspect of how bats with high-sugar diets are able to avoid the diseases typically associated with excessive sugar consumption than modifications to glucose metabolism.

physiology↗

bioRxiv2026

Cross-Continental Analysis of Vampire Bat Betaherpesvirus Reveals Limited Interference Among Strains and Local Geographic Spread

Desmodus rotundus Betaherpesvirus (DrBHV) is a candidate vector for a transmissible vaccine targeting the circulation of rabies virus within its vampire bat reservoir. Studies assessing the potential for DrBHV as a vector have not considered its geographic range, potential for transboundary spread or how the diversity of wildtype DrBHV in natural bat populations might impede the spread of a modified vaccine strain. Here, by sequencing DrBHVs from vampire bats spanning 15 regions across 7 rabies-affected countries in Latin America and the Caribbean, we characterise the continent-scale distribution of DrBHV diversity and demonstrate widespread and apparently unconstrained co-infection. DrBHV occurred in all regions, forming a monophyletic clade consistent with a single introduction to vampire bats or host-virus co-speciation rather than frequent host switching. Phylogeographic analyses revealed cross-boundary spread that was predicted by geographic proximity. We identified 50 putative DrBHV strains and 79% of DrBHV-infected bats harboured multiple strains. No strains were over- or under-represented in co-infection and co-infections occurred proportionately to local strain prevalence. Whether strains circulated in given populations was predominantly driven by the geographic proximity of other populations containing that strain. The evolutionary relatedness of strains constrained neither rates of co-infection within individuals nor whether strains co-circulated within regions, suggesting vaccine vectors might be locally sourced rather than requiring imported, divergent strains to ameliorate interference. These results support the viability of DrBHV-vectored vaccines for mitigating rabies virus across Latin America and the Caribbean, despite widespread circulation of wildtype viruses.

genomics↗

bioRxiv2026

Validating wing biopsies for blood-borne pathogen characterization in bats

Wildlife surveillance is critical for tracking disease emergence, characterizing pathogen diversity, and assessing spillover risks. Blood-borne pathogens are of particular interest for such efforts due to their global distribution, broad host taxa, and zoonotic potential. Despite the need to monitor blood-borne pathogens, blood collection efforts are costly for both biologists and the wildlife being sampled (i.e., time-consuming and stressful), hindering our ability to expand and enhance surveillance efforts. There is thus a pressing need for reliable methods for detecting blood-borne pathogens that minimize sampling efforts and wildlife stress. Vascular tissues can contain enough blood to detect infections while minimizing sampling effort and stress on wildlife, but it is unclear how pathogen detection and characterization from these tissues compared to blood. To evaluate the reliability of using vascular tissues for detecting blood-borne pathogens in wildlife, we collected paired samples of blood and wing biopsies from individual common vampire bats (Desmodus rotundus) and molecularly screened them for bartonellae, hemotropic mycoplasmas (hemoplasmas), and trypanosomes. The probability of detection was consistently lower in wing tissues than in blood for all pathogens, possibly due to blood vessel avoidance when collecting the former. However, we detected infection in wing tissues of at least two individual bats for each blood-borne pathogen. Paired-positive individuals mostly showed high sequence concordance between tissues, indicating frequent detection of the same infections. Estimated sample sizes needed to detect a single infection and the reported prevalences were similar (i.e., n = 10-39). Due to the lower probability of infection in wing tissues compared to blood, we suggest that using these samples to estimate infection prevalence of blood-borne pathogens is not ideal. However, our results demonstrate that vascular tissues are viable for initial pathogen assessment and discovery to help target surveillance efforts in the future.

ecology↗

bioRxiv2025

Vampire bats in Belize harbor multiple Trypanosoma cruzi genotypes: implications for parasite transmission at the wildlife-domestic-human interface

BackgroundChagas disease, caused by Trypanosoma cruzi, is a neglected tropical disease with complex sylvatic and domestic transmission cycles involving vectors, mammalian hosts, and humans. The common vampire bat (Desmodus rotundus) is an obligate blood-feeding species that frequently interacts with livestock and humans, yet their role in parasite maintenance in Central America remains poorly characterized. Methodology/Principal FindingsWe analyzed 205 blood samples from vampire bats collected at two sites in northern Belize over three years (2019, 2021, 2022). PCR screening revealed an overall T. cruzi prevalence of 41.5% and increasing infection risks over time. The amplicon-based next-generation sequencing of the parasite mini-exon locus identified 36 unique haplotypes belonging to five DTUs: TcI, TcIV, TcV, TcVI, and TcBat. TcBat was present in half of the samples sequenced. TcBat and TcVI, were detected in Belize for the first time. Belizean TcBat haplotypes clustered closely with Colombian reference sequences, and a subset formed a Belize-specific clade, indicating previously unrecognized TcBat diversity in the region; in contrast, Brazilian TcBat sequences were more distantly related. Conclusions/SignificanceVampire bats in Belize harbor diverse T. cruzi genotypes, including DTUs with established roles in human disease. Given their obligate blood diet, frequent feeding on livestock, and occasional biting of humans, vampire bats may serve as bridge hosts linking sylvatic, domestic, and human transmission cycles. Together with a recent report of an acute human Chagas disease case in northern Belize, these results underscore the need for integrated One Health surveillance of bats, vectors, livestock, and humans to better evaluate and mitigate the risk of Chagas disease in Central America. Author SummaryChagas disease, caused by the parasite Trypanosoma cruzi, is a major public health concern in the Americas but remains neglected in many regions, including Central America. The parasite is typically transmitted by kissing bugs, but wild mammals also serve as important hosts. Vampire bats (Desmodus rotundus) are unique because they feed exclusively blood and frequently bite livestock, and occasionally humans, creating opportunities for parasite transmission across different environments. In this study, we screened 205 vampire bats from northern Belize and found that over 40% were infected with T. cruzi. By sequencing parasite DNA, we discovered a surprising diversity of DTUs, including TcI, TcIV, TcV, TcVI, and TcBat. The detection of TcVI is particularly important, because this DTU, associated with human infections in South America, had not been previously reported in Belize. TcBat haplotypes were highly prevalent and genetically diverse. Our results show that vampire bats are important hosts of diverse T. cruzi genotypes in Belize and may act as bridge hosts between wildlife, livestock, human transmission cycles. Enhanced One Health surveillance across vectors, bats, domestic animals, and humans will be critical for understanding and preventing Chagas disease emergence in Central America.

molecular biology↗

bioRxiv2025

Neotropical bats as bioindicators for emerging zoonoses in Central America: A case study identifying Trypanosoma cruzi in bats from Belize using metagenomic next-generation sequencing

Emerging zoonoses remain a global public health concern. Surveillance of infectious and vector-borne diseases is vital for predicting and mitigating detrimental effects of zoonotic spillover events. Beyond assessing what microorganisms are circulating in specific environments, it is important to understand how potential reservoir hosts, especially animals such as bats, participate in pathogen transmission. Bats can host and potentially spread infections caused by bacteria, viruses, fungi, and protozoa. However, bats can also act as bioindicators that test positive for pathogenic microorganisms without necessarily contributing to the pathogen replication cycle. Metagenomic next-generation sequencing (mNGS) provides an efficient means to broadly screen for pathogens, although microorganism selectivity can sometimes be lower than targeted approaches. Pairing mNGS results with higher-sensitivity tests such as quantitative PCR (qPCR) can validate results and together these tools provide a relatively fast and reliable method for conducting surveillance. To test this approach, we surveyed the types of microorganisms circulating in Belize by collecting 263 blood samples from 20 different bat species captured in the Orange Walk District in 2019, 2022, and 2023. We used mNGS to initially characterize the microbial communities and qPCR to confirm presence and intensity of human pathogens of interest. We detected 1,430 different microorganisms with some relevance to human or animal health, including the protozoan Trypanosoma cruzi which was detected in the phyllostomid bats Desmodus rotundus and Artibeus jamaicensis. qPCR confirmed the presence and intensity of Trypanosoma cruzi in mNGS-positive bat samples. We documented the types of pathogenic microorganisms circulating throughout the bat community in northern Belize to demonstrate the capacity for bats to serve as bioindicators. Author SummaryTracking the spread of new and emerging zoonotic diseases is a major component of global health research. Pathogen surveillance is a vital part of predicting and reducing the consequences of disease outbreaks. Bats are a diverse group of mammals that can host and potentially transmit many pathogens that pose potential risks to human and environmental health. Our study surveyed blood samples (n=263) from 20 bat species collected from the Orange Walk District of Belize in 2019, 2022, and 2023. Metagenomic next-generation sequencing identified 1,430 different microorganisms that are considered potentially relevant to human or animal health. Among the microorganisms detected was Trypanosoma cruzi (T. cruzi), the protozoan causative agent of Chagas disease. T. cruzi was of particular interest due to its presence throughout the Americas and relevance to public health. We surveyed the types of microorganisms circulating throughout bat populations in northern Belize to demonstrate the ability of bats to act as bioindicators.

microbiology↗

bioRxiv2025

Multi-trophic metacommunity responses to habitatnfragmentation in the Brazilian Atlantic Forest

The structure of ecological communities is profoundly altered by anthropogenic disturbance to landscapes. However, most reported impacts rely on the quantification of diversity estimates for single trophic levels or impacts on key species of interest. In this analysis we integrate measures of community structure, comparisons of interaction networks and measures of {beta}-diversity across four trophic levels: plants, bats, bat ectoparasites and bacteria within the ectoparasites. Our data show that bat, bat fly, and bacterial communities are significantly nested across forest fragments, with specialist consumers in all groups being found in fewer fragments than generalists. We found substantial {beta}-diversity in both species richness and interaction richness across fragments but no decline in interaction redundancy with decreasing fragment size, likely because even intact forest networks had very low redundancy in our dataset. Despite the loss of species and interactions, our data provide support for the conservation value of even the smallest and most disturbed forest fragments where essential seed dispersal services are potentially maintained by Artibeus, Carollia and Sturnira and distinct sets of taxa and interactions are supported. These species may be key in the potential recovery of these habitats, but our data highlight the fragility of these communities which have contracted around these disturbance-tolerant species.

ecology↗

bioRxiv2025

Longitudinal impacts of habitat fragmentation on Bartonella and hemotropic Mycoplasma dynamics in vampire bats

Habitat fragmentation can have negative impacts on wildlife including increased risk of infectious disease. To assess spatiotemporal changes in pathogen dynamics in vampire bats (Desmodus rotundus) in response to habitat fragmentation, we used general linear mixed models to investigate the influence of site, year, and tree cover on the prevalence of Bartonella and hemotropic Mycoplasma (hemoplasma) in bats in one large and one small forest fragment in northern Belize across seven years. Bartonella was marginally more prevalent in later years, while year and site differences in hemoplasma infections were driven by a peak in prevalence in the third year of the study in the small fragment. Bartonella prevalence increased with forest loss, but only in the large fragment, whereas hemoplasma prevalence showed a marginal negative response to forest loss. The effects of site, year, and forest loss on infection likelihood varied by pathogen genotype. Neither site nor year affected Bartonella genotypes, but one genotype was positively associated with tree cover. Two hemoplasma genotypes were influenced by year, but with differing trends. One genotype increased with tree cover regardless of site while another increased with forest loss at the small fragment only. Our work demonstrates that the effects of habitat fragmentation on infection prevalence depended on both the pathogen and specific genotype. Our findings complicate expectations of how habitat fragmentation affects infectious disease dynamics in bats. As such, management practices aimed at mitigating the impacts of infectious diseases in fragmented systems should be tailored to specific pathogens of concern.

ecology↗

bioRxiv2025

Sampling intensity and temporal persistence of airborne eDNA in partially enclosed spaces

Airborne environmental DNA (eDNA) has shown promise as a terrestrial biomonitoring tool and its ecological applications are expanding. Despite its growing use, airborne eDNA does not yet have the extensive body of supporting research like its aquatic counterpart, with considerable uncertainty remaining concerning how airborne eDNA behaves, with regards to signal duration, and how much sampling effort is needed to capture DNA in a given airspace. By using airborne eDNA in a semi-controlled environment which acted as an artificial roost where bat species and their abundances were known, we estimated the sampling intensity (both the number of samples and number of sampling events) required to capture bat diversity of a given airspace, as well as signal persistence of airborne eDNA. Together these data provide a temporal scale for airborne eDNA measurements. The majority of species richness was detected using as little as 4 samplers in this enclosed space and the greater the number of sampling events, the fewer samplers were needed. Both air movement and the type of environment (i.e., enclosed space, open area etc.) are likely to impact detection and need to be considered during study design. eDNA also appeared to settle out of the air quickly, suggesting that detections likely reflect recent activity, which also has important implication for rare species which may only have a narrow window for detection. Our results add to the growing body of literature that indicate airborne eDNA can be a useful biosurvey method, especially for rapid surveys in communities with high turnover rates.

ecology↗

bioRxiv2025

229E- and NL63-like coronaviruses in phyllostomid bats, Belize

We report novel and previously identified alphacoronavirus (-CoV) diversity in three phyllostomid bat species (Desmodus rotundus, Carollia sowelli, and Sturnira parvidens) in Belize. Phylogenetic analysis suggests strong similarity between two Neotropical bat -CoV lineages and human CoVs (229E and NL63) compared to prior bat -CoVs.

ecology↗

bioRxiv2023

Expanded diversity of hemoplasmas in rare and undersampled Neotropical bats

Hemotropic mycoplasmas are emerging as a model system for studying bacterial pathogens in bats, but taxonomic coverage of sampled host species remains biased. We leveraged a long-term field study in Belize to uncover novel hemoplasma diversity in bats by analyzing 80 samples from 19 species, most of which are infrequently encountered. PCR targeting the partial 16S rRNA gene found 41% of bats positive for hemoplasmas. Phylogenetic analyses found two novel host shifts of hemoplasmas, four entirely new hemoplasma genotypes, and the first hemoplasma detections in four bat species. One of these novel hemoplasmas (from Neoeptesicus furinalis) shared 97.6% identity in the partial 16S rRNA gene to a human hemoplasma (Candidatus Mycoplasma haemohominis). Additional analysis of the partial 23S rRNA gene allowed us to also designate two novel hemoplasma species, in Myotis elegans and Phyllostomus discolor, with the proposed names Candidatus Mycoplasma haematomyotis sp. nov. and Candidatus Mycoplasma haematophyllostomi sp. nov., respectively. Our analyses show that additional hemoplasma diversity in bats can be uncovered by targeting rare or undersampled host species.

microbiology↗

bioRxiv2023

Bat cellular immunity varies by year and dietary habit in an increasingly fragmented landscape

Monitoring the health of wildlife populations is essential in the face of increased agricultural expansion and forest fragmentation. Loss of habitat and habitat degradation can negatively affect an animals physiological state, possibly resulting in immunosuppression and increased morbidity or mortality. We sought to determine how fragmentation may differentially impact cellular immunity and infection risk in Neotropical bats species regularly infected with bloodborne pathogens, and to evaluate how effects may vary over time and by dietary habit. We studied common vampire bats (Desmodus rotundus), northern yellow-shouldered bats (Sturnira parvidens), and Mesoamerican mustached bats (Pteronotus mesoamericanus), representing the dietary habits of sanguinivory, frugivory, and insectivory respectively, in northern Belize. We compared estimated total white blood cell counts, leukocyte differentials, and infection status with two blood-borne bacterial pathogens (Bartonella spp. and hemoplasmas) of 118 bats captured in a broadleaf, secondary forest over a three-year period (2017-2019) of increasing habitat fragmentation. We found evidence for bat species-specific responses of cellular immunity between years, with neutrophil counts increasing in D. rotundus, but decreasing in S. parvidens and P. mesoamericanus from 2018 to 2019. However, the odds of infection with Bartonella spp. and hemoplasma spp. between 2017 and 2019 did not differ between bat species, contrary to our prediction that pathogen prevalence may increase with increased fragmentation. We conclude that each bat species invested differently in cellular immunity in ways that changed over years of increasing fragmentation. We recommend further research on the interactions between habitat fragmentation, cellular immunity, and infection across dietary habits of Neotropical bats for informed management and conservation.

ecology↗

bioRxiv2023

Integrative single-cell characterization of frugivory adaptations in the bat kidney and pancreas

Frugivory evolved multiple times in mammals, including bats. However, the cellular and molecular components driving it remain largely unknown. Here, we used integrative single-cell sequencing on insectivorous and frugivorous bat kidneys and pancreases and identified key cell population, gene expression and regulatory element differences associated with frugivorous adaptation that also relate to human disease, particularly diabetes. We found an increase in collecting duct cells and differentially active genes and regulatory elements involved in fluid and electrolyte balance in the frugivore kidney. In the frugivorous pancreas, we observed an increase in endocrine and a decrease in exocrine cells and differences in genes and regulatory elements involved in insulin regulation. Combined, our work provides novel insights into frugivorous adaptation that also could be leveraged for therapeutic purposes.

genomics↗

bioRxiv2022

Out of thin air: surveying tropical bat roosts through air sampling of eDNA

Understanding roosting behaviour is essential to bat conservation and biomonitoring, often providing the most accurate methods of assessing population size and health. However, roosts can be challenging to survey. Roosts can be physically impossible to access or present risks for researchers and disturbance during monitoring can disrupt natural bat behaviour and present material risks to the population e.g. disrupting hibernation cycles. One solution to this is the use of non-invasive monitoring approaches. Environmental (e)DNA has proven especially effective at detecting rare and elusive species particularly in hard-to-reach locations. It has recently been demonstrated that eDNA is carried in air and, when collected in semi-confined spaces can provide remarkably accurate profiles of biodiversity, even in complex tropical communities. In this study we deploy novel airborne eDNA collection for air for the first time in a natural setting and use this approach to survey difficult to access potential roosts in the neotropics. Using airborne eDNA we confirmed the presence of bats in 9 out of 12 roosts. The identified species matched previous historical records of roost use obtained from photographic and live capture methods demonstrating the utility of this approach. We also detected the presence of the white-winged vampire bat (Diaemus youngi) which had never been confirmed in the area but was long suspected. In addition to the bats, we also detected several non-bat vertebrates, including the big-eared climbing rat (Ototylomys phyllotis), which has previously been observed in and around bat roosts. We also detected eDNA from other local species known to be in the vicinity. Using airborne eDNA to detect new roosts and monitor known populations, particularly when species turnover is rapid, could maximize efficiency for surveyors while minimizing disturbance to the animals. This study presents the first applied use of airborne eDNA collection for ecological analysis and demonstrates a clear utility for this technology in the wild.

ecology↗

bioRxiv2022

Phylogenetic and Ecological Trends in Specialization: Disentangling the Drivers of Ectoparasite Host Specificity

O_LIEcological specialization reflects both evolutionary and ecological processes. For parasitic taxa, ecological specialization can be assessed as the degree to which a parasite species will associate with certain host species, a property known as host specificity. C_LIO_LIEctoparasitic bat flies have been previously reported as highly host specific, presumably due to a history of coevolution with their bat hosts. However, there is conflicting evidence of coevolution between bats and bat flies. Resource-driven competition between parasite individuals and between species may also be important in explaining patterns of bat fly specificity. C_LIO_LITo test the importance of evolutionary and ecological factors on bat fly specificity, we collected and identified 21 bat fly species from 16 host bat species from the State of Rio de Janeiro in Brazil. We generated a bat fly species phylogeny from molecular data, estimated d specialization values (a metric of specificity), and used linear and cophylogenetic models to compare the importance of various drivers of parasite ecological specialization. C_LIO_LIWe found that bat fly co-occurrence frequency (a proxy for interspecific competition) and mean infection intensity (a proxy for intraspecific competition) best predicted patterns of bat fly specialization. Co-occurrence frequency had a significantly negative association with specialization, while mean infection intensity has a significantly positive association with specialization. Coevolutionary congruence had a small effect size and did not significantly predict parasite specialization. C_LIO_LIWe found multiple shifts toward more generalized host niches across the bat fly phylogeny. Our results suggest that ecological processes such as resource-driven competition may be more important than evolutionary processes in shaping bat fly host specialization networks. C_LIO_LIBat flies showed variable degrees of host specialization, parasitized phylogenetically distant host species, and showed low phylogenetic congruence to their hosts. This suggests that as a group, bat flies may show flexibility in their host preference phenotypes and may change their host associations in the face of environmental disturbance. C_LI

ecology↗

bioRxiv2022

Serum proteomics identifies immune pathways and candidate biomarkers of coronavirus infection in wild vampire bats

The apparent ability of bats to harbor many virulent viruses without showing disease is likely driven by distinct immune responses that coevolved with mammalian flight and the exceptional longevity of this order. Yet our understanding of the immune mechanisms of viral tolerance is restricted to a small number of bat-virus relationships and remains poor for coronaviruses (CoVs), despite their relevance to human health. Proteomics holds particular promise for illuminating the immune factors involved in bat responses to infection, because it can accommodate especially low sample volumes (e.g., sera) and thus can be applied to both large and small bat species as well as in longitudinal studies where lethal sampling is necessarily limited. Further, as the serum proteome includes proteins secreted from not only blood cells but also proximal organs, it provides a more general characterization of immune proteins. Here, we expand our recent work on the serum proteome of wild vampire bats (Desmodus rotundus) to better understand CoV pathogenesis. Across 19 bats sampled in 2019 in northern Belize with available sera, we detected CoVs in oral or rectal swabs from four individuals (21.1% positivity). Phylogenetic analyses identified all vampire bat sequences as novel -CoVs most closely related to known human CoVs. Across 586 identified serum proteins, we found no strong differences in protein composition nor abundance between uninfected and infected bats. However, receiver operating characteristic curve analyses identified seven to 32 candidate biomarkers of CoV infection, including AHSG, C4A, F12, GPI, DSG2, GSTO1, and RNH1. Enrichment analyses using these protein classifiers identified downregulation of complement, regulation of proteolysis, immune effector processes, and humoral immunity in CoV-infected bats alongside upregulation of neutrophil immunity, overall granulocyte activation, myeloid cell responses, and glutathione processes. Such results denote a mostly cellular immune response of vampire bats to CoV infection and identify putative biomarkers that could provide new insights into CoV pathogenesis in wild and experimental populations. More broadly, applying a similar proteomic approach across diverse bat species and to distinct life history stages in target species could improve our understanding of the immune mechanisms by which wild bats tolerate viruses.

ecology↗

bioRxiv2021

Ecological constraints on highly evolvable olfactory receptor genes and morphology

While evolvability of genes and traits may promote specialization during species diversification, how ecology subsequently restricts such variation remains unclear. Chemosensation requires animals to decipher a complex chemical background to locate fitness-related resources, and thus the underlying genomic architecture and morphology must cope with constant exposure to a changing odorant landscape; detecting adaptation amidst extensive chemosensory diversity is an open challenge. Phyllostomid bats, an ecologically diverse clade that evolved plant-visiting from an insectivorous ancestor, suggest the evolution of novel food detection mechanisms is a key innovation: phyllostomids behaviorally rely strongly on olfaction, while echolocation is supplemental. If this is true, exceptional variation in underlying olfactory genes and phenotypes may have preceded dietary diversification. We compared olfactory receptor (OR) genes sequenced from olfactory epithelium transcriptomes and olfactory epithelium surface area of bats with differing diets. Surprisingly, although OR evolution rates were quite variable and generally high, they are largely independent of diet. Olfactory epithelial surface area, however, is relatively larger in plant-visiting bats and there is an inverse relationship between OR evolution rates and surface area. Relatively larger surface areas suggest greater reliance on olfactory detection and stronger constraint on maintaining an already diverse OR repertoire. Instead of the typical case in which specialization and elaboration is coupled with rapid diversification of associated genes, here the relevant genes are already evolving so quickly that increased reliance on smell has led to stabilizing selection, presumably to maintain the ability to consistently discriminate among specific odorants -- a potential ecological constraint on sensory evolution. Significance StatementThe evolutionary relationship between genes and morphology is complex to decipher, and macroevolutionary trends are often measured independently; this is especially challenging to quantify in unstable genomic regions or hypervariable traits. Odorant cues are detected by proteins encoded by the largest and fasted-evolving gene family in the mammalian genome and expressed in epithelia distributed on elaborate bony structures in the nose, posing a challenge to quantification. Yet, the direct interaction of the olfactory system with environmental signals strongly suggest that selection shapes its immense diversity. In neotropical bats, where reliance on plant-visiting evolved from an insectivorous ancestor, we discovered clear dietary differences amongst species, but only after considering morphological and molecular data simultaneously, emphasizing the power of a coupled analysis.

evolutionary biology↗

bioRxiv2021

Untangling the ecological signal in the dental morphology in the bat superfamily Noctilionoidea

Diet has been linked to the diversification of the bat superfamily Noctilionoidea, a group that underwent an impressive ecological adaptive radiation within Mammalia. For decades, studies have explored morphological adaptations and diversity of noctilionoid bats to reveal traits associated with their ecological diversity. Surprisingly, despite such interest and recent application of novel techniques, ecomorphological studies have failed to fully resolve the link between diet and a critical component of the feeding apparatus: dental morphology. Using multivariate dental topographic analysis and phylogenetic comparative methods, we examined the phylogenetic, biological and ecological signal in the dental morphology of noctilionoid bats. Analysing the lower first molars of 110 species, we explored relationships between diet and dental morphology, accounting for three different dimensions of diet (guild, composition and breadth). Phylogenetic and size-dependent structuring of the dental topography data shows it does not correlate only to diet, highlighting the need to account for multiple sources of variation. Frugivorous noctilionoids have sharper molars than other previously reported frugivorous mammals. Nectarivorous noctilionoids showed reduced lower molar crown height and steepness, whereas animalivorous species had larger molars. Dietary composition suggested that the intensity of exploitation of a resource is also linked to different dimensions of dental morphology. Increasing carnivory positively correlated with MA, explaining the highest proportion of its variation, and increasing frugivory explained the highest proportion of variation in all other variables. Dietary breadth showed generalist species have sharper, more topographically-complex molars, whereas specialist herbivores and specialist animalivores fell at opposite ends in the range of tooth steepness and crown height. Together, the results suggest that adaptations affecting different attributes of dental morphology likely facilitated the dietary diversity and specialisation found in Noctilionoidea.

ecology↗

bioRxiv2021

Inter- and intra-specific variation in hair cortisol concentrations of Neotropical bats

Quantifying hair cortisol has become popular in wildlife ecology for its practical advantages for evaluating health. Before hair cortisol levels can be reliably interpreted however, it is key to first understand the intrinsic factors explaining intra- and interspecific variation. Bats are an ecologically diverse group of mammals that allow studying such variation. Given that many bat species are threatened or have declining populations in parts of their range, non-invasive tools for monitoring colony health and identifying cryptic stressors are needed to efficiently direct conservation efforts. Here we describe intra- and interspecific sources of variation in hair cortisol levels in 18 Neotropical bat species from Mexico and Belize. We found that fecundity is an important ecological trait explaining interspecific variation in bat hair cortisol. Other ecological variables such as colony size, roost durability, and basal metabolic rate did not explain hair cortisol variation among species. At the individual level, females exhibited higher hair cortisol levels than males, and the effect of body mass varied among species. Overall, our findings help validate and accurately apply hair cortisol as a monitoring tool in free-ranging bats.

ecology↗