Biology subjects

Sikes, J.

Publications and source records attributed to Sikes, J..

3 recordsLinked to original sources

bioRxiv2026

Carnitine deficiency alters fuel metabolism and voluntary wheel running in mice

BackgroundCarnitine plays an obligatory role in energetics owing to its role in the translocation of long-chain fatty acids into the mitochondrion for oxidation. Here, we determined the metabolic and behavioral consequences of systemic carnitine deficiency (SCD) in mice. MethodsFemale C57BL/6J mice were randomized to receive normal drinking water (control, n = 8) or drinking water supplemented with mildronate 4g.L-1 (mildronate, n = 8) for 21 days. Body composition was assessed at baseline and post treatment. Metabolic and behavioral phenotyping was performed continuously over 72 hours following 14 days of control or mildronate treatment. Stable isotope were used to assess whole-body substrate oxidation. Carnitine subfractions were quantified in skeletal muscle and liver, as was mitochondrial respiratory function. Liver and muscle samples also underwent proteomic analysis. ResultsMildronate treatment depleted total carnitine in muscle and liver by [~]97% (P < 0.001) and [~]90% (P < 0.001), respectively. Carnitine depletion was accompanied by lower total energy expenditure (P = 0.01), attributable to lower voluntary wheel running (P = 0.01). Oxidation rates of palmitate (P < 0.01) but not octanoate were lower whereas rates of glucose oxidation were greater in carnitine depleted mice (P < 0.01). Mitochondrial respiratory capacity was unaltered by carnitine deficiency. Carnitine deficiency remodeled muscle and liver proteomes to support lipid oxidation and energy production. SummaryIn mice, carnitine deficiency is characterized by decreased long-chain fatty acid oxidation despite preserved mitochondrial respiratory capacity. Carnitine deficiency resulted in lower voluntary exercise and a concomitant reduction in energy expenditure.

physiology↗

bioRxiv2023

PCP components control anterior and posterior regeneration, with a Prickle homolog impacting muscle organization, in the acoel Hofstenia miamia

Whole-body regeneration requires wound response signals to control patterning programs to enable replacement of structures in their correct locations. While a number of molecular mechanisms underlying anterior-posterior regeneration have been identified, how small fragments of animals first re-establish polarity is less well understood, with non-canonical Wnt signaling recently emerging as a potential regulator. Here, we used the acoel worm Hofstenia miamia, a new research organism capable of robust whole-body regeneration, to assess functions of the components of the Planar Cell Polarity (PCP) pathway in establishing regeneration polarity. We identified homologs of Prickle (pk-1) and Diego (dgo-1) to be required for head and tail regeneration, respectively. RNA-sequencing analysis and experimental corroboration revealed that pk-1 RNAi resulted in diminished expression of early wound response genes as well as of wound-induced expression of the anterior-specific marker fz-7, specifically in tail fragments. In contrast, dgo-1 RNAi impacted wound-induced expression of the posterior-specific marker tf7l2, specifically in head fragments. Furthermore, pk-1 and dgo-1 are enriched in longitudinal muscle, with muscle fibers showing disorganized morphology at anterior-facing wound sites of tail fragments under pk-1 RNAi. These findings suggest that pk-1 and dgo-1 are needed for wound-induced expression of anterior- and posterior-specific genes, and raise the possibility that this action is mediated via the control of muscle fiber orientation. Our work expands the study of PCP genes by revealing their functions in the process of whole-body regeneration in acoels, the sister-group to all other animals with bilateral symmetry, and will enable future studies of PCP components in controlling cellular and tissue-wide regeneration polarity.

developmental biology↗

bioRxiv2023

Coordinated wound responses in a regenerative animal-algal photosymbiotic metaorganism

Animal regeneration requires coordinated responses of many cell types throughout the animal body. In animals carrying endosymbionts, cells from the other species may also participate in regeneration, but how cellular responses are integrated across species is yet to be unraveled. Here, we study the acoel Convolutriloba longifissura, which hosts symbiotic Tetraselmis green algae and can regenerate entire bodies from small tissue fragments. We show that animal injury leads to a decline in the photosynthetic efficiency of the symbiotic algae and concurrently induces upregulation of a cohort of photosynthesis-related genes. A deeply conserved animal transcription factor, runt, is induced after injury and required for the acoel regeneration. Knockdown of runt also dampens algal transcriptional responses to the host injury, particularly in photosynthesis related pathways, and results in further reduction of photosynthetic efficiency post-injury. Our results suggest that the runt-dependent animal regeneration program coordinates wound responses across the symbiotic partners and regulates photosynthetic carbon assimilation in this metaorganism.

developmental biology↗