Biology subjects

Siegfried, H.

Publications and source records attributed to Siegfried, H..

5 recordsLinked to original sources

bioRxiv2025

KIAA1217/SKT is a centrosomal protein that regulates ciliogenesis

Centrosomes organize the microtubule network along the cell cycle and drive cilia assembly in resting cells to allow sensory or motility functions. Defects in cilia formation underlie ciliopathies and skeletal disorders, but the molecular regulators that couple centrosomes to signaling and cytoskeletal networks remain incompletely defined. Through BioID screening for CYLD interactors, we identify KIAA1217/SKT as a centrosomal and microtubule plus-end protein that also associates with focal adhesions. KIAA1217 loss in RPE-1 cells impaired ciliogenesis, producing fewer and shorter cilia. Domain mapping revealed an N-terminal centrosomal targeting domain and an EB1-dependent targeting of KIAA1217 to microtubule tips via C-terminal SxIP motifs. Importantly, defects caused by loss of KIAA1217 or its paralog p140Cap were rescued by inhibiting actin polymerization or Src activity, indicating regulation of actin polymerization through Src family activity. Together, our findings establish KIAA1217 as a positive regulator of ciliogenesis that integrates Src-dependent signaling, centrosomal architecture, and actin remodeling and may open new research avenues to understand KIAA1217-associated pathologies as vertebrate malformation and epithelia-mesenchymal transition. Centrosome, Ciliogenesis, Actin, Src family signaling, KIAA217/SKT, p140Cap

cell biology↗

bioRxiv2025

Intratumoral Heterogeneity of Vimentin Modulates Nuclear Mechanotransduction, DNA Damage Response and Cancer Cell Survival

Vimentin, a major intermediate filament protein, is essential for maintaining cellular integrity and regulating cytoskeletal dynamics. Its upregulation is a hallmark of epithelial-to-mesenchymal transition (EMT), a process that enhances cancer cell migration, invasion, and metastatic potential. However, single-cell transcriptomic analyses of glioblastoma, the most common and aggressive primary brain tumor, reveal that vimentin expression exhibits significant intratumoral heterogeneity, reflecting diverse cellular subpopulations that may contribute to tumor plasticity, therapy resistance, and disease progression. Here, we show that the absence of vimentin alters nuclear mechanotransduction in response to compression, leading to chromatin remodelling and profound changes in gene expression in cancer cells. Remarkably, we demonstrate that external compressive forces, akin to vimentin deficiency, disrupt DNA damage response pathways. This impairment compromises DNA damage sensing and repair, bypassing DNA damage checkpoints and apoptosis. Consequently, vimentin-negative tumor cells exhibit increased survival in response to physical stress and DNA damage, potentially driving radioresistance and further amplifying intratumoral heterogeneity.

cancer biology↗

bioRxiv2022

The ER tether VAPA is required for proper cell motility and for anchoring ER-plasma membrane contact sites to focal adhesions

Cell motility processes highly depend on the membrane distribution of Phosphoinositides (PInst), giving rise to cytoskeleton reshaping and membrane trafficking events. Membrane contact sites serve as platforms for lipid exchange and calcium fluxes between two organelles. Here, we show that VAPA, an ER membrane-resident contact site tether, plays a crucial role during cell motility. CaCo2 adenocarcinoma epithelial cells depleted for VAPA exhibit several collective and individual motility defects, disorganized actin cytoskeleton and altered protrusive activity. During migration, VAPA is required for the maintenance of PI(4,5)P2 levels at the plasma membrane, but not for PI(4)P homeostasis in the Golgi and endosomal compartments. Importantly, we show that VAPA regulates the dynamics of focal adhesions (FA) through its MSP domain, and is essential to stabilize and anchor ventral ER-PM contact sites to FA, thus mediating microtubule-dependent FA disassembly. To conclude, our results reveal unprecedented functions for VAPA-mediated membrane contact sites during cell motility and provides a dynamic picture of ER-PM contact sites connection with FA mediated by VAPA.

cell biology↗

bioRxiv2020

Temporally integrated single cell RNA sequencing analysis of controlled and natural primary human DENV-1 infections

Controlled dengue human infection studies present an opportunity to address many longstanding questions in the field of flavivirus biology. However, limited data are available on how the immunological and transcriptional response elicited by an attenuated challenge virus compares to that associated with a wild-type DENV infection. To bridge this knowledge gap, we utilized scRNAseq to analyze PBMC from individuals enrolled in a DENV-1 controlled human challenge study and from individuals experiencing a natural primary DENV-1 infection. While both controlled and natural DENV infection resulted in overlapping patterns of inflammatory gene upregulation, natural DENV infection was accompanied with a more pronounced suppression in gene products associated with protein translation and mitochondrial function, principally in monocytes. This suggests that the immune response elicited by controlled and natural primary DENV infection are similar, but that natural DENV infection has a more pronounced impact on basic cellular processes to induce a multi-layered anti-viral state

immunology↗

bioRxiv2020

Analysis of cell-associated DENV RNA by oligo(dT) primed 5' capture scRNAseq

Dengue is one of the most widespread vector-borne viral diseases in the world. However, the size, heterogeneity, and temporal dynamics of the cell-associated viral reservoir during acute dengue virus (DENV) infection remains unclear. In this study, we analyzed cells infected in vitro with DENV and PBMC from an individual experiencing a natural DENV infection utilizing 5 capture single cell RNA sequencing (scRNAseq). Both positive- and negative-sense DENV RNA was detected in reactions containing either an oligo(dT) primer alone, or in reactions supplemented with a DENV-specific primer. The addition of a DENV-specific primer did not increase the total amount of DENV RNA captured or the fraction of cells identified as containing DENV RNA. However, inclusion of a DENV-specific cDNA primer did increase the viral genome coverage immediately 5 to the primer binding site. Furthermore, while the majority of intracellular DENV sequence captured in this analysis mapped to the 5 end of the viral genome, distinct patterns of enhanced coverage within the DENV polyprotein coding region were observed. The 5 capture scRNAseq analysis of PBMC not only recapitulated previously published reports by detecting virally infected memory and naive B cells, but also identified cell-associated genomic variants not observed in contemporaneous serum samples. These results demonstrate that oligo(dT) primed 5 capture scRNAseq can detect DENV RNA and quantify virus-infected cells in physiologically relevant conditions, and provides insight into viral sequence variability within infected cells. IMPORTANCEDengue is one of the most widespread vector-borne viral diseases in the world. However, it is still unclear which cells harbor virus during DENV infection, and how viral reservoirs in serum and infected cells are related. These results demonstrate for the first time that intracellular DENV RNA can be identified and infected cells quantified by 5 capture scRNAseq. This strategy provides a significantly greater throughput and higher sensitivity than previously published methods and has the potential to provide additional information on the genomic heterogeneity of intracellular DENV RNA.

microbiology↗